RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GSCP56915 257 aaPredicted RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 CNGA2Q16280 664 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 PPP1R15BQ5SWA1 713 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 UBXN11Q5T124 520 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 ADAT2Q7Z6V5 191 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 C3orf20Q8ND61 904 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 CELF4Q9BZC1 486 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 RAB17Q9H0T7 212 aa27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 NXF3Q9H4D5 531 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 UBQLN1Q9UMX0 589 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 UTP11Q9Y3A2 253 aaKnown RBP27.91■■■□□ 2.06
CCDC88C-205ENST00000553403 SEPT4O43236 478 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 XKR4Q5GH76 650 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 GDAP1L1Q96MZ0 367 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 MED4Q9NPJ6 270 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 HMGXB4Q9UGU5 601 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 PCYOX1Q9UHG3 505 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 GTF2IRD1Q9UHL9 959 aa27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 WDR3Q9UNX4 943 aaKnown RBP eCLIP27.9■■■□□ 2.06
CCDC88C-205ENST00000553403 TRIP12Q14669 1992 aaPredicted RBP27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 HMGCRP04035 888 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 DR1Q01658 176 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 GABPB1Q06547 395 aaPredicted RBP27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 MREGQ8N565 214 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 CXCL16Q9H2A7 254 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 FAM114A2Q9NRY5 505 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 WDR35Q9P2L0 1181 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 HES2Q9Y543 173 aa27.89■■■□□ 2.06
CCDC88C-205ENST00000553403 H3BQF6 201 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 XPOTO43592 962 aaKnown RBP27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 MICAL2O94851 1124 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 RARBP10826 455 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 NDST1P52848 882 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 MRPS6P82932 125 aaKnown RBP27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 SIX1Q15475 284 aaPredicted RBP27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 PTPN20Q4JDL3 420 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 SGO2Q562F6 1265 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 KATNAL2Q8IYT4 538 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 ZDHHC14Q8IZN3 488 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 C12orf50Q8NA57 414 aaPredicted RBP27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 MAGOHBQ96A72 148 aaKnown RBP27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 NT5C1AQ9BXI3 368 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 ST7Q9NRC1 585 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 CASP8AP2Q9UKL3 1982 aa27.88■■■□□ 2.05
CCDC88C-205ENST00000553403 CD4P01730 458 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 KCNE1P15382 129 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 ATF7P17544 494 aaPredicted RBP27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 STILQ15468 1287 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 NBPF20Q3BBV1 942 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 HSP90B2PQ58FF3 399 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 DCUN1D2Q6PH85 259 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 HEXIM2Q96MH2 286 aaKnown RBP27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 TUBGCP4Q9UGJ1 667 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 RASAL2Q9UJF2 1139 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 SCN10AQ9Y5Y9 1956 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 M0QZ92 97 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 O00370 1275 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 GJB6O95452 261 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 RPLP2P05387 115 aaKnown RBP27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 RPL7AP62424 266 aaKnown RBP27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 PRKCZQ05513 592 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 PIGHQ14442 188 aaPredicted RBP27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 TRADDQ15628 312 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 RSPH3Q86UC2 560 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 NIPA2Q8N8Q9 360 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 MCEEQ96PE7 176 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 CYTH4Q9UIA0 394 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 TRPV2Q9Y5S1 764 aa27.87■■■□□ 2.05
CCDC88C-205ENST00000553403 SIGLEC16A6NMB1 481 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 RARAP10276 462 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 PTGIRP43119 386 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 FNTAP49354 379 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 TAS2R40P59535 323 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 ORC1Q13415 861 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 ZNF268Q14587 947 aaPredicted RBP27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 LRRC38Q5VT99 294 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 C9orf57Q5W0N0 161 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 ALS2CLQ60I27 953 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 CXCL17Q6UXB2 119 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 FAM228AQ86W67 206 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 FAM71BQ8TC56 605 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 C18orf25Q96B23 403 aaPredicted RBP27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 C18orf8Q96DM3 657 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 APOL6Q9BWW8 343 aa27.86■■■□□ 2.05
CCDC88C-205ENST00000553403 PGK1P00558 417 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 FAM153BP0C7A2 387 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 AKAP5P24588 427 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 ECHS1P30084 290 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 GABRB2P47870 512 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 DRG2P55039 364 aaKnown RBP27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 HLTFQ14527 1009 aaKnown RBP eCLIP27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 FAM153CQ494X1 144 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 CYP4A22Q5TCH4 519 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 LCLAT1Q6UWP7 414 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 JAMLQ86YT9 394 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 EXD1Q8NHP7 514 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 ERP44Q9BS26 406 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 LRRC19Q9H756 370 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 FAM153AQ9UHL3 310 aa27.85■■■□□ 2.05
CCDC88C-205ENST00000553403 PDCD11Q14690 1871 aaKnown RBP27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms