RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 COPS5Q92905 334 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 UBIAD1Q9Y5Z9 338 aa17.08■□□□□ 0.32
CUX1-213ENST00000549414 ZC3H11AO75152 810 aaKnown RBP eCLIP17.07■□□□□ 0.323e-6■■■■□ 25.7
CUX1-213ENST00000549414 DGKDQ16760 1214 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 SH2D4BQ5SQS7 431 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 DAB2IPQ5VWQ8 1189 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 MOB2Q70IA6 237 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 ZFYVE28Q9HCC9 887 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 EIF4E1BA6NMX2 242 aaKnown RBP17.07■□□□□ 0.32
CUX1-213ENST00000549414 FAM107AO95990 144 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 CETPP11597 493 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 PRKCIP41743 596 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 VGLL4Q14135 290 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 TRADDQ15628 312 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 CCNYL1Q8N7R7 359 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 AENQ8WTP8 325 aaKnown RBP17.07■□□□□ 0.32
CUX1-213ENST00000549414 ASCC2Q9H1I8 757 aaPredicted RBP17.07■□□□□ 0.32
CUX1-213ENST00000549414 CYP39A1Q9NYL5 469 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 RIPK3Q9Y572 518 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 MAPTP10636 758 aaKnown RBP17.07■□□□□ 0.32
CUX1-213ENST00000549414 OTUD4Q01804 1114 aaKnown RBP17.07■□□□□ 0.32
CUX1-213ENST00000549414 TMEM161BQ8NDZ6 487 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 MYCBPAPQ8TBZ2 947 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 CLMNQ96JQ2 1002 aa17.07■□□□□ 0.32
CUX1-213ENST00000549414 FAM47DPA6NHR8 397 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 DFFAO00273 331 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 HAUS5O94927 633 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 UBA1P22314 1058 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 CTCFP49711 727 aaPredicted RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 CENPCQ03188 943 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 DNAJC3Q13217 504 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 KYAT1Q16773 422 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 PDCD6IPQ8WUM4 868 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 RSAD1Q9HA92 442 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 NPHS2Q9NP85 383 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 ZFATQ9P243 1243 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 GNL1P36915 607 aaPredicted RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 TPI1P60174 286 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 POU5F1BQ06416 359 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 PAN2Q504Q3 1202 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 LRRC34Q8IZ02 419 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 ASAP3Q8TDY4 903 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 RAPGEF5Q92565 580 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 CAVIN3Q969G5 261 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 OSMRQ99650 979 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 TMBIM4Q9HC24 238 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 CPA4Q9UI42 421 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 ARHGEF37A1IGU5 675 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 HNRNPH3P31942 346 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 RPL21P46778 160 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 SLC12A1Q13621 1099 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 TMEM132BQ14DG7 1078 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 APTXQ7Z2E3 356 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 KIF9Q9HAQ2 790 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 H3BRB1 525 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 PMLP29590 882 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 FOXR1Q6PIV2 292 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 KDM7AQ6ZMT4 941 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 SAMD3Q8N6K7 520 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 DNERQ8NFT8 737 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 TUT1Q9H6E5 874 aaKnown RBP17.06■□□□□ 0.32
CUX1-213ENST00000549414 SMYD3Q9H7B4 428 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 SETD4Q9NVD3 440 aa17.06■□□□□ 0.32
CUX1-213ENST00000549414 KDM3BQ7LBC6 1761 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 MAP2K7O14733 419 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 ADCY3O60266 1144 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 DIAPH2O60879 1101 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 NUMBP49757 651 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 HYIQ5T013 277 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 C11orf63Q6NUN7 778 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 ANO5Q75V66 913 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 RNF135Q8IUD6 432 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 KIF2BQ8N4N8 673 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 ACTL9Q8TC94 416 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 DDX23Q9BUQ8 820 aaKnown RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 PSMC3IPQ9P2W1 217 aaPredicted RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 SALL4Q9UJQ4 1053 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 SETD1AO15047 1707 aaKnown RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 ASTN2O75129 1339 aaPredicted RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 IRF6O14896 467 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 TAF11Q15544 211 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 TAF1BQ53T94 588 aaPredicted RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 MDH1BQ5I0G3 518 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 GJC2Q5T442 439 aaPredicted RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 VCXQ9H320 206 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 RRAGCQ9HB90 399 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 GBA2Q9HCG7 927 aaPredicted RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 TYW5A2RUC4 315 aaKnown RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 GAS2O43903 313 aaKnown RBP17.05■□□□□ 0.32
CUX1-213ENST00000549414 RPS6KA5O75582 802 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 RARGP13631 454 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 NOTUMQ6P988 496 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 TRPM4Q8TD43 1214 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 SPON2Q9BUD6 331 aa17.05■□□□□ 0.32
CUX1-213ENST00000549414 IGKV6D-41A0A0C4DH26 115 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 PSTPIP1O43586 416 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 XPAP23025 273 aaPredicted RBP17.04■□□□□ 0.32
CUX1-213ENST00000549414 PEX19P40855 299 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 STILQ15468 1287 aa17.04■□□□□ 0.32
CUX1-213ENST00000549414 BTBD8Q5XKL5 378 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms