RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RD3Q7Z3Z2 195 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 MB21D1Q8N884 522 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 TFAP2CQ92754 450 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 KIAA1191Q96A73 305 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 TRIM54Q9BYV2 358 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 CERS4Q9HA82 394 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 PPCSQ9HAB8 311 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 PNPLA8Q9NP80 782 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 ZDHHC8Q9ULC8 765 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 HS3ST4Q9Y661 456 aa5.04□□□□□ -1.6
VPS29-205ENST00000548539 ABHD14A-ACY1A0A1B0GW23 586 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 PRR5-ARHGAP8B1AHC4 643 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 ISM1B1AKI9 464 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 IFRD1O00458 451 aaPredicted RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 PJA2O43164 708 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 SLC43A1O75387 559 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 HAUS5O94927 633 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 AGFG2O95081 481 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 POMCP01189 267 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 PARP1P09874 1014 aaKnown RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 GNAT2P19087 354 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 HK1P19367 917 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 ABCB4P21439 1286 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 CLK3P49761 638 aaKnown RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 RPS16P62249 146 aaKnown RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 KIF22Q14807 665 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 TIGD2Q4W5G0 525 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 ZNF783Q6ZMS7 281 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 ZNF365Q70YC5 407 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 ENAHQ8N8S7 591 aaPredicted RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 BEND2Q8NDZ0 799 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 OR6B3Q8NGW1 331 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 TBC1D15Q8TC07 691 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 POF1BQ8WVV4 589 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 MAML1Q92585 1016 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 CPEB1Q9BZB8 566 aaKnown RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 JKAMPQ9P055 326 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 CFAP97Q9P2B7 532 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 AFF4Q9UHB7 1163 aaKnown RBP5.03□□□□□ -1.6
VPS29-205ENST00000548539 CDC23Q9UJX2 597 aa5.03□□□□□ -1.6
VPS29-205ENST00000548539 BTN3A1O00481 513 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 TBC1D4O60343 1298 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 IPO13O94829 963 aaKnown RBP5.02□□□□□ -1.61
VPS29-205ENST00000548539 UNC5CO95185 931 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 IL18RAPO95256 599 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 GNAI2P04899 355 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 RARBP10826 455 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 ALAS1P13196 640 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 TSHRP16473 764 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 ZNF135P52742 658 aaPredicted RBP5.02□□□□□ -1.61
VPS29-205ENST00000548539 SLC13A2Q13183 592 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 PMS2P11Q13670 270 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 DAG1Q14118 895 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 DHX8Q14562 1220 aaKnown RBP5.02□□□□□ -1.61
VPS29-205ENST00000548539 UBXN2BQ14CS0 331 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 FAM83BQ5T0W9 1011 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 EMC10Q5UCC4 262 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 EFCAB12Q6NXP0 572 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 TSHZ1Q6ZSZ6 1077 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 DPP9Q86TI2 863 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 FAM83AQ86UY5 434 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 MPP5Q8N3R9 675 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 SLC17A8Q8NDX2 589 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 TMIEQ8NEW7 156 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 NLGN4YQ8NFZ3 816 aaPredicted RBP5.02□□□□□ -1.61
VPS29-205ENST00000548539 ZFP28Q8NHY6 868 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 DEPTORQ8TB45 409 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 KBTBD7Q8WVZ9 684 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 SUCLG2Q96I99 432 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 CRB3Q9BUF7 120 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 IMPG2Q9BZV3 1241 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 GJB4Q9NTQ9 266 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 POGKQ9P215 609 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 COL20A1Q9P218 1284 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 AGAP1Q9UPQ3 857 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 SORCS3Q9UPU3 1222 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 MED16Q9Y2X0 877 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 PCDHGB2Q9Y5G2 931 aa5.02□□□□□ -1.61
VPS29-205ENST00000548539 SPATA31A6Q5VVP1 1343 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 GRXCR1A8MXD5 290 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 TMEM233B4DJY2 109 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 M0QYG6 137 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 RECQL4O94761 1208 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 PRSS23O95084 383 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 FOSP01100 380 aaPredicted RBP5.01□□□□□ -1.61
VPS29-205ENST00000548539 HARSP12081 509 aaKnown RBP5.01□□□□□ -1.61
VPS29-205ENST00000548539 RPL17P18621 184 aaKnown RBP5.01□□□□□ -1.61
VPS29-205ENST00000548539 ARFIP2P53365 341 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 MAPK10P53779 464 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 CTBP1Q13363 440 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 TRIM14Q14142 442 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 HABP2Q14520 560 aaPredicted RBP5.01□□□□□ -1.61
VPS29-205ENST00000548539 IZUMO3Q5VZ72 239 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 HIBCHQ6NVY1 386 aaPredicted RBP5.01□□□□□ -1.61
VPS29-205ENST00000548539 ERAP2Q6P179 960 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 MED25Q71SY5 747 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 DOK3Q7L591 496 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 FITM2Q8N6M3 262 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 AOPEPQ8N6M6 819 aa5.01□□□□□ -1.61
VPS29-205ENST00000548539 SUPT20HQ8NEM7 779 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms