RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PLCB2Q00722 1185 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 FOXK2Q01167 660 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 MYL7Q01449 175 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 CSTF1Q05048 431 aaKnown RBP14.13□□□□□ -0.15
RTN3-213ENST00000543552 KCNA1Q09470 495 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 LRRC32Q14392 662 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 SURF1Q15526 300 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 ARHGAP29Q52LW3 1261 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 GPR158Q5T848 1215 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 ARID3BQ8IVW6 561 aaPredicted RBP14.13□□□□□ -0.15
RTN3-213ENST00000543552 MAML2Q8IZL2 1156 aaPredicted RBP14.13□□□□□ -0.15
RTN3-213ENST00000543552 TTC9BQ8N6N2 239 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 IQUBQ8NA54 791 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 NOC3LQ8WTT2 800 aaKnown RBP14.13□□□□□ -0.15
RTN3-213ENST00000543552 RUBCNQ92622 972 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 MAGEF1Q9HAY2 307 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 KIAA1586Q9HCI6 787 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 ZSCAN32Q9NX65 697 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 ABI2Q9NYB9 513 aaPredicted RBP14.13□□□□□ -0.15
RTN3-213ENST00000543552 AGAP1Q9UPQ3 857 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 SCN1AP35498 2009 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 EP300Q09472 2414 aaPredicted RBP14.13□□□□□ -0.15
RTN3-213ENST00000543552 CACNA1IQ9P0X4 2223 aa14.13□□□□□ -0.15
RTN3-213ENST00000543552 COL4A3Q01955 1670 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 A0A087X0B3 334 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 NRG2O14511 850 aaPredicted RBP14.12□□□□□ -0.15
RTN3-213ENST00000543552 CUTAO60888 179 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 SOAT2O75908 522 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 DDX6P26196 483 aaKnown RBP eCLIP14.12□□□□□ -0.15
RTN3-213ENST00000543552 NRLP54845 237 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 RBP5P82980 135 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 BFSP1Q12934 665 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 MYO1EQ12965 1108 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 GAREM2Q75VX8 874 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 GPD1LQ8N335 351 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 CSGALNACT2Q8N6G5 542 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 C1orf127Q8N9H9 656 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 LEO1Q8WVC0 666 aaPredicted RBP14.12□□□□□ -0.15
RTN3-213ENST00000543552 SECISBP2LQ93073 1101 aaKnown RBP14.12□□□□□ -0.15
RTN3-213ENST00000543552 ANKRD36BP1Q96IX9 119 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 ACBD6Q9BR61 282 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 IKZF4Q9H2S9 585 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 CHRDQ9H2X0 955 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 TASP1Q9H6P5 420 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 ABCB6Q9NP58 842 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 PRMT8Q9NR22 394 aaPredicted RBP14.12□□□□□ -0.15
RTN3-213ENST00000543552 THG1LQ9NWX6 298 aaKnown RBP14.12□□□□□ -0.15
RTN3-213ENST00000543552 F5P12259 2224 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 NUP210Q8TEM1 1887 aaPredicted RBP14.12□□□□□ -0.15
RTN3-213ENST00000543552 FANCMQ8IYD8 2048 aa14.12□□□□□ -0.15
RTN3-213ENST00000543552 TICRRQ7Z2Z1 1910 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 ZNF233A6NK53 670 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 SOBPA7XYQ1 873 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 ARNTLO00327 626 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 EIF3DO15371 548 aaKnown RBP eCLIP14.11□□□□□ -0.15
RTN3-213ENST00000543552 TNNC2P02585 160 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 COL4A2P08572 1712 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 KRT19P08727 400 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 HAPLN1P10915 354 aaPredicted RBP14.11□□□□□ -0.15
RTN3-213ENST00000543552 ATF6P18850 670 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 PCSK1P29120 753 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 LHX1P48742 406 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 CCR3P51677 355 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 RPL10AP62906 217 aaKnown RBP14.11□□□□□ -0.15
RTN3-213ENST00000543552 ASIC1P78348 528 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 MTAPQ13126 283 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 STXBP5Q5T5C0 1151 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 MAMSTRQ6ZN01 415 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 RALGPS2Q86X27 583 aaPredicted RBP14.11□□□□□ -0.15
RTN3-213ENST00000543552 HSCBQ8IWL3 235 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 PDCL2Q8N4E4 241 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 TOP6BLQ8N6T0 577 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 SNX21Q969T3 373 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 LPIN3Q9BQK8 851 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 CBWD1Q9BRT8 395 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 TRIM9Q9C026 710 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 KBTBD4Q9NVX7 518 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 GDAP2Q9NXN4 497 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 UXTQ9UBK9 157 aaPredicted RBP14.11□□□□□ -0.15
RTN3-213ENST00000543552 UBE4BO95155 1302 aa14.11□□□□□ -0.15
RTN3-213ENST00000543552 DMXL1Q9Y485 3027 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 GOLGA8IPA6NC78 632 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 GOLGA8JA6NMD2 632 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 PRPF6O94906 941 aaKnown RBP14.1□□□□□ -0.15
RTN3-213ENST00000543552 CSH1P0DML2 217 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 CSH2P0DML3 217 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 CCNE1P24864 410 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 AVPR1AP37288 418 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 ID4P47928 161 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 DUOXA2Q1HG44 320 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 CNNM4Q6P4Q7 775 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 ADGRF2Q8IZF7 708 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 ZNF687Q8N1G0 1237 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 CELF5Q8N6W0 485 aaKnown RBP14.1□□□□□ -0.15
RTN3-213ENST00000543552 ZBTB44Q8NCP5 570 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 BPIFB1Q8TDL5 484 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 GIPC2Q8TF65 315 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 MRPS31Q92665 395 aaKnown RBP14.1□□□□□ -0.15
RTN3-213ENST00000543552 DHX58Q96C10 678 aa14.1□□□□□ -0.15
RTN3-213ENST00000543552 MKNK1Q9BUB5 465 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms