RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	EPHB6	O15197	1021 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	TEX28	O15482	410 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	ATP2C2	O75185	946 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CILP	O75339	1184 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	NOL4	O94818	638 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADH1A	P07327	375 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CNP	P09543	421 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	OR4Q2	P0C623	313 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CD19	P15391	556 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	PTPN1	P18031	435 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CAMK1	Q14012	370 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC39A12	Q504Y0	691 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPECC1L	Q69YQ0	1117 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	LIMS2	Q7Z4I7	341 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	ACOT1	Q86TX2	421 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	PALB2	Q86YC2	1186 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	VSTM4	Q8IW00	320 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	GPR65	Q8IYL9	337 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	RBBP8NL	Q8NC74	664 aa	Predicted RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZNF397	Q8NF99	534 aa	Predicted RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	OR10T2	Q8NGX3	314 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	ANP32B	Q92688	251 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	JAKMIP2	Q96AA8	810 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	MRPL38	Q96DV4	380 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	TMEM176A	Q96HP8	235 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	KLHL5	Q96PQ7	755 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	TMEM209	Q96SK2	561 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CLSTN3	Q9BQT9	956 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	MED10	Q9BTT4	135 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	DPEP3	Q9H4B8	488 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	IGFLR1	Q9H665	355 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CEP72	Q9P209	647 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	AJAP1	Q9UKB5	411 aa	Predicted RBP	10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	GTF3C4	Q9UKN8	822 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	CDH9	Q9ULB4	789 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	DAAM1	Q9Y4D1	1078 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	RANBP2	P49792	3224 aa	Known RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	FSD2	A1L4K1	749 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	FOXN3	O00409	490 aa	Predicted RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	PER2	O15055	1255 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	CYP26A1	O43174	497 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADAM12	O43184	909 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	LILRB3	O75022	631 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	ACO1	P21399	889 aa	Known RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	ELF1	P32519	619 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	PBX1	P40424	430 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	STAT1	P42224	750 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	NDUFV1	P49821	464 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	MRE11	P49959	708 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	INCA1	Q0VD86	236 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	MAPRE1	Q15691	268 aa	Known RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	MDH1B	Q5I0G3	518 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	INTS6L	Q5JSJ4	861 aa	Known RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	DPY19L2P1	Q6NXN4	242 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	RSPO2	Q6UXX9	243 aa	Predicted RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545		Q7L0L9	218 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPATA2L	Q8IUW3	424 aa	Predicted RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	GPIHBP1	Q8IV16	184 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	MICALL1	Q8N3F8	863 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	DEFB123	Q8N688	67 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	WHAMM	Q8TF30	809 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	IQCD	Q96DY2	449 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	MRFAP1L1	Q96HT8	127 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	PGLYRP2	Q96PD5	576 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	TWNK	Q96RR1	684 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	RTP3	Q9BQQ7	232 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	NAA15	Q9BXJ9	866 aa	Known RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	ELOVL4	Q9GZR5	314 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	FAM124B	Q9H5Z6	455 aa	Predicted RBP	10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	RXFP1	Q9HBX9	757 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	FNIP2	Q9P278	1114 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	HMGXB4	Q9UGU5	601 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	CIT	O14578	2027 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	ITIH6	Q6UXX5	1313 aa		10.82	□□□□□ -0.68
CPSF7-221	ENST00000543545	MYBPHL	A2RUH7	354 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPDYE4	A6NLX3	237 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	TBC1D4	O60343	1298 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	GFPT2	O94808	682 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPATA31D3	P0C874	917 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	PNMA6A	P0CW24	399 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	SOX5	P35711	763 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	NRIP1	P48552	1158 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	RAD23B	P54727	409 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	BPIFB4	P59827	614 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	ROR1	Q01973	937 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	CYP27A1	Q02318	531 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	ARID5A	Q03989	594 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	PTK2	Q05397	1052 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	GPR17	Q13304	367 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	RAB33A	Q14088	237 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	TRIM14	Q14142	442 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	NFE2	Q16621	373 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	TSR1	Q2NL82	804 aa	Known RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC8B1	Q6J4K2	584 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	GPR153	Q6NV75	609 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	C4orf50	Q6ZRC1	276 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	EP400NL	Q6ZTU2	488 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPATA31D4	Q6ZUB0	917 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADGRD2	Q7Z7M1	963 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	LRRTM3	Q86VH5	581 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms