RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 MLLT6P55198 1093 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 TFAMQ00059 246 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 PKP1Q13835 747 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 GAS6Q14393 721 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 OSTM1Q86WC4 334 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 THEM5Q8N1Q8 247 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 OR5B17Q8NGF7 314 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 C2orf15Q8WU43 125 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 C7orf25Q9BPX7 421 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 GZF1Q9H116 711 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 TMEM206Q9H813 350 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 SPATA6Q9NWH7 488 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 RBAKQ9NYW8 714 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 FBXO4Q9UKT5 387 aa12.73□□□□□ -0.37
CLSTN3-211ENST00000541667 PATJQ8NI35 1801 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 ZNF263O14978 683 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CHADO15335 359 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CUTAO60888 179 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 PRAMEF12O95522 483 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 LMNAP02545 664 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 F11P03951 625 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CHRNB1P11230 501 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CASP1P29466 404 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 MAGEA9P43362 315 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 GPR15P49685 360 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 SMARCB1Q12824 385 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 MTAPQ13126 283 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CCDC142Q17RM4 750 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 SOWAHAQ2M3V2 549 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 MGAT5BQ3V5L5 792 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 SV2CQ496J9 727 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 FOXD4L5Q5VV16 416 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 METTL23Q86XA0 190 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CBWD2Q8IUF1 395 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CCDC65Q8IXS2 484 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 SYCP3Q8IZU3 236 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 GPD1LQ8N335 351 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CSGALNACT2Q8N6G5 542 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 LRRC52Q8N7C0 313 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 ZBTB44Q8NCP5 570 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 SPPL2BQ8TCT7 592 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 GIPC2Q8TF65 315 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 FOXD4L4Q8WXT5 416 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 FAM3CQ92520 227 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 E2F7Q96AV8 911 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 SEPT5Q99719 369 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 ACBD6Q9BR61 282 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 ATXN3LQ9H3M9 355 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 CUEDC2Q9H467 287 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 TASP1Q9H6P5 420 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 PRMT8Q9NR22 394 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 INTS13Q9NVM9 706 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 PCDHA7Q9UN72 937 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 TICRRQ7Z2Z1 1910 aa12.72□□□□□ -0.37
CLSTN3-211ENST00000541667 TCHHQ07283 1943 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 MAN2B1O00754 1011 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 LILRB5O75023 590 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 ZSCAN22P10073 491 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 PNPLA4P41247 253 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 CYP4F8P98187 520 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 CSTF1Q05048 431 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 GPR158Q5T848 1215 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 LMBRD2Q68DH5 695 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 FAM171BQ6P995 826 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 TSSK4Q6SA08 328 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 ITIH5Q86UX2 942 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 RIN3Q8TB24 985 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 CACTINQ8WUQ7 758 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 SCFD1Q8WVM8 642 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 DHX58Q96C10 678 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 ZFYVE19Q96K21 471 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 ZNF396Q96N95 335 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 MTMR12Q9C0I1 747 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 CHRDQ9H2X0 955 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 LMAN1LQ9HAT1 526 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 DDX43Q9NXZ2 648 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 OBP2AQ9NY56 170 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 RCOR1Q9UKL0 485 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 ITGA11Q9UKX5 1188 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 MRPS17Q9Y2R5 130 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 NME7Q9Y5B8 376 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 PIAS3Q9Y6X2 628 aa12.71□□□□□ -0.37
CLSTN3-211ENST00000541667 DNAH14Q0VDD8 3507 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 MYBPHLA2RUH7 354 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 ZNF233A6NK53 670 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 KIAA0391O15091 583 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 NCAM2O15394 837 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 POLR2DO15514 142 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 LAMTOR5O43504 91 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 FGF19O95750 216 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 F13A1P00488 732 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 CST3P01034 146 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 ACAT1P24752 427 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 CCNE1P24864 410 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 CYP2F1P24903 491 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 LMO2P25791 158 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 SOX9P48436 509 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 NLRP12P59046 1061 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 RBP5P82980 135 aa12.7□□□□□ -0.38
CLSTN3-211ENST00000541667 INTS6LQ5JSJ4 861 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms