RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CCDC124Q96CT7 223 aaKnown RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 PI4K2AQ9BTU6 479 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 ETNK2Q9NVF9 386 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 KANSL3Q9P2N6 904 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 CHMP2BQ9UQN3 213 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 NAV1Q8NEY1 1877 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 C10orf71Q711Q0 1435 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 MAGEA10P43363 369 aaPredicted RBP13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC18A1P54219 525 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 TMPRSS15P98073 1019 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC10A5Q5PT55 438 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 KRT39Q6A163 491 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 PADI6Q6TGC4 694 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 MIPOL1Q8TD10 442 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 MBOAT7Q96N66 472 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 LXNQ9BS40 222 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 EBF3Q9H4W6 596 aa13.5□□□□□ -0.25
SFSWAP-209ENST00000540469 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 INHBAP08476 426 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 FDX1P10109 184 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 RARBP10826 455 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 PRELPP51888 382 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 TAS2R40P59535 323 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 ASPHQ12797 758 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 GRAMD1BQ3KR37 738 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 PRPF39Q86UA1 669 aaKnown RBP13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 CBWD2Q8IUF1 395 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 ARID3BQ8IVW6 561 aaPredicted RBP13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 CTAGE3PQ8IX95 158 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 MCOLN2Q8IZK6 566 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 RBM15BQ8NDT2 890 aaKnown RBP13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 SEMA4DQ92854 862 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 ACSF2Q96CM8 615 aaPredicted RBP13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 HSD17B14Q9BPX1 270 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 CYLDQ9NQC7 956 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 IL1RAPL1Q9NZN1 696 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 DAGLAQ9Y4D2 1042 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 TM9SF1O15321 606 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 PROSCO94903 275 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 DESP17661 470 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 KLHL38Q2WGJ6 581 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 MMEL1Q495T6 779 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 ATP13A4Q4VNC1 1196 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 ANKS1BQ7Z6G8 1248 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 PPP1R14CQ8TAE6 165 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 TMEM121Q9BTD3 319 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 VPS11Q9H270 941 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 TOPORSQ9NS56 1045 aaPredicted RBP13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 SERPINA10Q9UK55 444 aa13.49□□□□□ -0.25
SFSWAP-209ENST00000540469 PHLPP1O60346 1717 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TLR3O15455 904 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 PGM3O95394 542 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 CYP1A1P04798 512 aaPredicted RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 RXRBP28702 533 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 SCNN1DP51172 638 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TCP10Q12799 353 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 NFX1Q12986 1120 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TMED1Q13445 227 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 DBN1Q16643 649 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 PYDC1Q8WXC3 89 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TRIM11Q96F44 468 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 ZNF577Q9BSK1 485 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 AGTPBP1Q9UPW5 1226 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC4A7Q9Y6M7 1214 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 SHANK3Q9BYB0 1731 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 MEI4A8MW99 385 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 RNASEH1O60930 286 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 VAV1P15498 845 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 MORF4L2Q15014 288 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 OTOP1Q7RTM1 612 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 RELL1Q8IUW5 271 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 ULK2Q8IYT8 1036 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 FBXL13Q8NEE6 735 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TAS1R2Q8TE23 839 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 NAT14Q8WUY8 206 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 ALKBH8Q96BT7 664 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 ACAP3Q96P50 834 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 C1orf112Q9NSG2 853 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TCEAL9Q9UHQ7 104 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 F5H6K3 240 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 RIMBP2O15034 1052 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC16A4O15374 487 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 ATP6V1G1O75348 118 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 HARSP12081 509 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 KLRC2P26717 231 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 YWHAGP61981 247 aaKnown RBP eCLIP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 MTMR2Q13614 643 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 R3HDM1Q15032 1099 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 ACBD5Q5T8D3 534 aaPredicted RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC9A9Q8IVB4 645 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 OR6Y1Q8NGX8 325 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 IWS1Q96ST2 819 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 PHACTR1Q9C0D0 580 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 PPCSQ9HAB8 311 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 DNAAF2Q9NVR5 837 aaKnown RBP13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 GGA1Q9UJY5 639 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 PPM1HQ9ULR3 514 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 TMCO1Q9UM00 188 aa13.48□□□□□ -0.25
SFSWAP-209ENST00000540469 FAM163BP0C2L3 166 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 SNRNP35Q16560 246 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms