RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 ZFYVE19Q96K21 471 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 LPIN3Q9BQK8 851 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 PYM1Q9BRP8 204 aaKnown RBP12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 RBM12Q9NTZ6 932 aaKnown RBP12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 DPP3Q9NY33 737 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 MYH11P35749 1972 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 HRO43593 1189 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 PPP1R37O75864 691 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 IL18RAPO95256 599 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 HAPLN1P10915 354 aaPredicted RBP12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 DDX6P26196 483 aaKnown RBP eCLIP12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 PNPLA4P41247 253 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 CYP4F8P98187 520 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 GRIN1Q05586 938 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 PON2Q15165 354 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 SF3A1Q15459 793 aaKnown RBP12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 TAF12Q16514 161 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 CSRP2Q16527 193 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 LPAL2Q16609 132 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 ITPRIPL2Q3MIP1 535 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 SV2CQ496J9 727 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 ZC2HC1CQ53FD0 456 aaPredicted RBP12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 Q6ZS52 159 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 ZNF720Q7Z2F6 126 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 LRRTM3Q86VH5 581 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 WDR5BQ86VZ2 330 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 CMTM8Q8IZV2 173 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 ZNF560Q96MR9 790 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 SLC46A2Q9BY10 475 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 KIF9Q9HAQ2 790 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 SEMA4GQ9NTN9 838 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 SEL1LQ9UBV2 794 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 STK17AQ9UEE5 414 aa12.96□□□□□ -0.33
CBX3P4-202ENST00000540428 NCOR2Q9Y618 2525 aa12.96□□□□□ -0.34
CBX3P4-202ENST00000540428 CCDC163A0A0D9SF12 145 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 KPNA7A9QM74 516 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 TISP43B9A030 160 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 SLC30A4O14863 429 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 CD2BP2O95400 341 aaKnown RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 DMWDQ09019 674 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 NFE2Q16621 373 aaPredicted RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 WSCD1Q658N2 575 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 CRELD2Q6UXH1 353 aaPredicted RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 GPIHBP1Q8IV16 184 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 EFCAB13Q8IY85 973 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 LEO1Q8WVC0 666 aaPredicted RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 POMGNT1Q8WZA1 660 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 FAM83CQ9BQN1 747 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 STRA6Q9BX79 667 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 ABI2Q9NYB9 513 aaPredicted RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 EXOC7Q9UPT5 735 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 PCDHB5Q9Y5E4 795 aa12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.95□□□□□ -0.34
CBX3P4-202ENST00000540428 F11P03951 625 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 CSH1P0DML2 217 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 CSH2P0DML3 217 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 HMGA1P17096 107 aaKnown RBP12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 ADSSP30520 456 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 AVPR1AP37288 418 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 NLRP12P59046 1061 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 AMPD2Q01433 879 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 TSPY1Q01534 308 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 TNK2Q07912 1038 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 PRR23CQ6ZRP0 262 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 TMEM150AQ86TG1 271 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 SFR1Q86XK3 245 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 BRSK2Q8IWQ3 736 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 TTC8Q8TAM2 541 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 SPATA18Q8TC71 538 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 GIPC2Q8TF65 315 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 ABCB6Q9NP58 842 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 GKN1Q9NS71 199 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 CCDC39Q9UFE4 941 aa12.94□□□□□ -0.34
CBX3P4-202ENST00000540428 NUP210Q8TEM1 1887 aaPredicted RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 TSC2P49815 1807 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 DCDC2BA2VCK2 349 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 TRDMT1O14717 391 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 ATG13O75143 517 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 LDHAP00338 332 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 GAP43P17677 238 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 GRSF1Q12849 480 aaKnown RBP eCLIP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 BFSP1Q12934 665 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 SRSF5Q13243 272 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 RUNX3Q13761 415 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 ZNF268Q14587 947 aaPredicted RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 TMEM196Q5HYL7 178 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 L1TD1Q5T7N2 865 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 CEP68Q76N32 757 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 MON1AQ86VX9 555 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 TMEM86AQ8N2M4 240 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 LRRC52Q8N7C0 313 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 MAB21L3Q8N8X9 362 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 CACTINQ8WUQ7 758 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 MRPS31Q92665 395 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 USP13Q92995 863 aaPredicted RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 EPSTI1Q96J88 318 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 LOXL4Q96JB6 756 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 ACBD6Q9BR61 282 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 SMG9Q9H0W8 520 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms