RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MOSPD3O75425 235 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 DLATP10515 647 aaKnown RBP12.42□□□□□ -0.42
RTN3-209ENST00000538995 MYL4P12829 197 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 FCARP24071 287 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 PCSK1P29120 753 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 LHX1P48742 406 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 STK4Q13043 487 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 LMBRD2Q68DH5 695 aaPredicted RBP12.42□□□□□ -0.42
RTN3-209ENST00000538995 TRAPPC11Q7Z392 1133 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 LIMS2Q7Z4I7 341 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 ADGRF2Q8IZF7 708 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 HS6ST3Q8IZP7 471 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 TTC9BQ8N6N2 239 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 FLCNQ8NFG4 579 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 SMARCD2Q92925 531 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 HPDLQ96IR7 371 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 SHDQ96IW2 340 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 ASB16Q96NS5 453 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 SEPT5Q99719 369 aaPredicted RBP12.42□□□□□ -0.42
RTN3-209ENST00000538995 KXD1Q9BQD3 176 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 RPP25Q9BUL9 199 aaKnown RBP12.42□□□□□ -0.42
RTN3-209ENST00000538995 ZFP14Q9HCL3 533 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 SLC27A5Q9Y2P5 690 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 PCDHB5Q9Y5E4 795 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 SNX9Q9Y5X1 595 aa12.42□□□□□ -0.42
RTN3-209ENST00000538995 PDXKO00764 312 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 EXOC3O60645 756 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 ABCB7O75027 752 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 RHOBTB3O94955 611 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 STAU1O95793 577 aaKnown RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 RPN1P04843 607 aaKnown RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 HAPLN1P10915 354 aaPredicted RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 ATF6P18850 670 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 TNNI1P19237 187 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 RFX1P22670 979 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 AP3M2P53677 418 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 GPC5P78333 572 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 PRKCQQ04759 706 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 TCF15Q12870 199 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DPYDQ12882 1025 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 MGAT5BQ3V5L5 792 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 INTS6LQ5JSJ4 861 aaKnown RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 FAM78AQ5JUQ0 283 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 KRBA2Q6ZNG9 492 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DNAJB7Q7Z6W7 309 aaPredicted RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 LRRTM3Q86VH5 581 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 RDH13Q8NBN7 331 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 SHKBP1Q8TBC3 707 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DEPDC1BQ8WUY9 529 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DNASE1L2Q92874 299 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 E2F7Q96AV8 911 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 CCDC127Q96BQ5 260 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DOCK6Q96HP0 2047 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 FAM84AQ96KN4 292 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 KCTD10Q9H3F6 313 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 GOLPH3LQ9H4A5 285 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 TBC1D17Q9HA65 648 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DMAC2Q9NW81 257 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 DDX43Q9NXZ2 648 aaKnown RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 ABI2Q9NYB9 513 aaPredicted RBP12.41□□□□□ -0.42
RTN3-209ENST00000538995 ZMYM5Q9UJ78 669 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 CA14Q9ULX7 337 aa12.41□□□□□ -0.42
RTN3-209ENST00000538995 NRG2O14511 850 aaPredicted RBP12.4□□□□□ -0.42
RTN3-209ENST00000538995 ZNF202O95125 648 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 FAM163BP0C2L3 166 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 CDC25CP30307 473 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 STARD6P59095 220 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 CLDN10P78369 228 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 KCNB1Q14721 858 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 TEAD2Q15562 447 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 MLF2Q15773 248 aaPredicted RBP12.4□□□□□ -0.42
RTN3-209ENST00000538995 SOWAHAQ2M3V2 549 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 CFAP221Q4G0U5 840 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 TANGO2Q6ICL3 276 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 CCDC105Q8IYK2 499 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 ZSCAN18Q8TBC5 510 aaPredicted RBP12.4□□□□□ -0.42
RTN3-209ENST00000538995 FUBP3Q96I24 572 aaKnown RBP eCLIP12.4□□□□□ -0.42
RTN3-209ENST00000538995 GCNAQ96QF7 691 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 PKMYT1Q99640 499 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 DDX23Q9BUQ8 820 aaKnown RBP12.4□□□□□ -0.42
RTN3-209ENST00000538995 GZF1Q9H116 711 aaPredicted RBP12.4□□□□□ -0.42
RTN3-209ENST00000538995 SLITRK6Q9H5Y7 841 aa12.4□□□□□ -0.42
RTN3-209ENST00000538995 A0A1W2PRU2 124 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 MAPK13O15264 365 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 CALUO43852 315 aaPredicted RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 TACC1O75410 805 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 SOAT2O75908 522 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 NR3C1P04150 777 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 PRR29P0C7W0 189 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 WARSP23381 471 aaKnown RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 WEE1P30291 646 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 ATICP31939 592 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 RPL10AP62906 217 aaKnown RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 MAPRE1Q15691 268 aaKnown RBP12.39□□□□□ -0.43
RTN3-209ENST00000538995 TAF12Q16514 161 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 NFIL3Q16649 462 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 ARHGAP15Q53QZ3 475 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 SCARA3Q6AZY7 606 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 C4orf50Q6ZRC1 276 aa12.39□□□□□ -0.43
RTN3-209ENST00000538995 GAREM2Q75VX8 874 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms