RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 TMEM209Q96SK2 561 aa15.48■□□□□ 0.07
CPSF1-206ENST00000531480 MMS19Q96T76 1030 aa15.48■□□□□ 0.07
CPSF1-206ENST00000531480 MRPL45Q9BRJ2 306 aaKnown RBP15.48■□□□□ 0.07
CPSF1-206ENST00000531480 S1PR5Q9H228 398 aa15.48■□□□□ 0.07
CPSF1-206ENST00000531480 NDST4Q9H3R1 872 aa15.48■□□□□ 0.07
CPSF1-206ENST00000531480 SMYD3Q9H7B4 428 aa15.48■□□□□ 0.07
CPSF1-206ENST00000531480 DDX43Q9NXZ2 648 aaKnown RBP15.48■□□□□ 0.07
CPSF1-206ENST00000531480 CLDND1Q9NY35 253 aa15.48■□□□□ 0.07
CPSF1-206ENST00000531480 MAGEC2Q9UBF1 373 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-206ENST00000531480 NXF1Q9UBU9 619 aaKnown RBP15.48■□□□□ 0.07
CPSF1-206ENST00000531480 LIMA1Q9UHB6 759 aaKnown RBP15.48■□□□□ 0.07
CPSF1-206ENST00000531480 AFF4Q9UHB7 1163 aaKnown RBP15.48■□□□□ 0.07
CPSF1-206ENST00000531480 C2orf16Q68DN1 1984 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 SMTNL1A8MU46 457 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 LMO2P25791 158 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 PCSK1P29120 753 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 KRT31Q15323 416 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 LEXMQ3ZCV2 418 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 VWA3BQ502W6 1294 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 INTS6LQ5JSJ4 861 aaKnown RBP15.47■□□□□ 0.07
CPSF1-206ENST00000531480 DPY19L2P1Q6NXN4 242 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 LRSAM1Q6UWE0 723 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 UNC93AQ86WB7 457 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 GLYCTKQ8IVS8 523 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 UBR7Q8N806 425 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 SMRP1Q8NCR6 262 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 KREMEN2Q8NCW0 462 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 CCDC150Q8NCX0 1101 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 EHBP1Q8NDI1 1231 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 C2orf15Q8WU43 125 aaKnown RBP15.47■□□□□ 0.07
CPSF1-206ENST00000531480 TATDN2Q93075 761 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 ELMO3Q96BJ8 720 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 MAN1C1Q9NR34 630 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 ZDHHC7Q9NXF8 308 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 CDH9Q9ULB4 789 aa15.47■□□□□ 0.07
CPSF1-206ENST00000531480 BARX2Q9UMQ3 279 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-206ENST00000531480 DENND4AQ7Z401 1863 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 MTMR11A4FU01 709 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 OR4Q2P0C623 313 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 GNL1P36915 607 aaPredicted RBP15.46■□□□□ 0.07
CPSF1-206ENST00000531480 CDH8P55286 799 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 ZNF445P59923 1031 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 GCNT1Q02742 428 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 TFF2Q03403 129 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 HSP90AA4PQ58FG1 418 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 WDR44Q5JSH3 913 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 LLGL2Q6P1M3 1020 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 CYP26C1Q6V0L0 522 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 RNF19BQ6ZMZ0 732 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 DCP1BQ8IZD4 617 aaKnown RBP15.46■□□□□ 0.07
CPSF1-206ENST00000531480 TTC39CQ8N584 583 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 SFXN1Q9H9B4 322 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 CBX8Q9HC52 389 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 VCANP13611 3396 aa15.46■□□□□ 0.07
CPSF1-206ENST00000531480 HCRTO43612 131 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 CILPO75339 1184 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 ZMYND10O75800 440 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 SEC24AO95486 1093 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 HNRNPA1P09651 372 aaKnown RBP eCLIP15.45■□□□□ 0.06
CPSF1-206ENST00000531480 CPB1P15086 417 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 TBXAS1P24557 533 aaPredicted RBP15.45■□□□□ 0.06
CPSF1-206ENST00000531480 TSPY1Q01534 308 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 ITIH3Q06033 890 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 NFE2Q16621 373 aaPredicted RBP15.45■□□□□ 0.06
CPSF1-206ENST00000531480 CFAP221Q4G0U5 840 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 TRIM65Q6PJ69 517 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 ELMSAN1Q6PJG2 1045 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 CRYBG2Q8N1P7 616 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 FAM200AQ8TCP9 573 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 WHAMMQ8TF30 809 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 SUSD6Q92537 303 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 ZNF707Q96C28 371 aaPredicted RBP15.45■□□□□ 0.06
CPSF1-206ENST00000531480 SYT15Q9BQS2 421 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 SNX25Q9H3E2 840 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 ABCB6Q9NP58 842 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 CRTAC1Q9NQ79 661 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 TMLHEQ9NVH6 421 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 C5orf42Q9H799 3197 aa15.45■□□□□ 0.06
CPSF1-206ENST00000531480 NOTCH4Q99466 2003 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 WEE2P0C1S8 567 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 SPATA31D3P0C874 917 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 ATP1A3P13637 1013 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 KCNA5P22460 613 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 ACAT1P24752 427 aaKnown RBP15.44■□□□□ 0.06
CPSF1-206ENST00000531480 PON1P27169 355 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 RAP1GAPP47736 663 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 ADCY1Q08828 1119 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 CUL2Q13617 745 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 GSE1Q14687 1217 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 MAPRE1Q15691 268 aaKnown RBP15.44■□□□□ 0.06
CPSF1-206ENST00000531480 EXOC3L4Q17RC7 722 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 SLC39A12Q504Y0 691 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 PHLDB3Q6NSJ2 640 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 SCARA5Q6ZMJ2 495 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 GBP6Q6ZN66 633 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 SPATA31D4Q6ZUB0 917 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 CCDC149Q6ZUS6 474 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 OR6B3Q8NGW1 331 aa15.44■□□□□ 0.06
CPSF1-206ENST00000531480 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-206ENST00000531480 MYCBPAPQ8TBZ2 947 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms