RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ANKFY1Q9P2R3 1169 aa4.74□□□□□ -1.65
CD44-233ENST00000531141 SPATA31A3Q5VYP0 1347 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 A0A087WWL8 130 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 MYO1CO00159 1063 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 FOXN3O00409 490 aaPredicted RBP4.73□□□□□ -1.65
CD44-233ENST00000531141 MYL1P05976 194 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 MYF5P13349 255 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 CHRM3P20309 590 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 NPTX2P47972 431 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 SLC11A2P49281 568 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 WNT3P56703 355 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 SCAPQ12770 1279 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 SLC13A2Q13183 592 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 LONRF3Q496Y0 759 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 AMOTQ4VCS5 1084 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 IGFL4Q6B9Z1 124 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 TAF2Q6P1X5 1199 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 AMER2Q8N7J2 671 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 NSUN7Q8NE18 718 aaKnown RBP4.73□□□□□ -1.65
CD44-233ENST00000531141 SSH3Q8TE77 659 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 NUP62CLQ9H1M0 184 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 INTS13Q9NVM9 706 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 MRPS18AQ9NVS2 196 aaKnown RBP4.73□□□□□ -1.65
CD44-233ENST00000531141 TESQ9UGI8 421 aaKnown RBP4.73□□□□□ -1.65
CD44-233ENST00000531141 AFF4Q9UHB7 1163 aaKnown RBP4.73□□□□□ -1.65
CD44-233ENST00000531141 OGDHLQ9ULD0 1010 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 PCDHGB6Q9Y5F9 930 aa4.73□□□□□ -1.65
CD44-233ENST00000531141 A0A0B4J269 797 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 PIPSLA2A3N6 862 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TRIM43BA6NCK2 446 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 MBD3L4A6NDZ8 208 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 MBD3L3A6NE82 208 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 BTN3A1O00481 513 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TBC1D4O60343 1298 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 VPS4BO75351 444 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 EGR2P11161 476 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 ITGAMP11215 1152 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 CYP2C9P11712 490 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 PHKG2P15735 406 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TGM1P22735 817 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 ZEB1P37275 1124 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 AVPR1BP47901 424 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 GCLCP48506 637 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 NDUFV1P49821 464 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TOB1P50616 345 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 SATB1Q01826 763 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 FPGSQ05932 587 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TUBB3Q13509 450 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 SAFBQ15424 915 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-233ENST00000531141 CNGA2Q16280 664 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 CD300EQ496F6 205 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 GPR149Q86SP6 731 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 MAML1Q92585 1016 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TRIM43Q96BQ3 446 aaPredicted RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 NMD3Q96D46 503 aaKnown RBP4.72□□□□□ -1.65
CD44-233ENST00000531141 LRIG1Q96JA1 1093 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 COQ10AQ96MF6 247 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 SLC46A1Q96NT5 459 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 OSBPL9Q96SU4 736 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 PRRX2Q99811 253 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 ZNF518BQ9C0D4 1074 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 SMURF2Q9HAU4 748 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 ZNF287Q9HBT7 754 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 XPR1Q9UBH6 696 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 TMX2Q9Y320 296 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 RAD54BQ9Y620 910 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 USP19O94966 1318 aa4.72□□□□□ -1.65
CD44-233ENST00000531141 GRID2IPA4D2P6 1211 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 HKR1P10072 659 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 SRGNP10124 158 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 XRCC6P12956 609 aaKnown RBP eCLIP4.71□□□□□ -1.66
CD44-233ENST00000531141 KLRC1P26715 233 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 PPIFP30405 207 aaKnown RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 GDF5P43026 501 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 SUMO3P55854 103 aaPredicted RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 UCP3P55916 312 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 TAP1Q03518 808 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 IQCB1Q15051 598 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 COBLL1Q53SF7 1204 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 LAYNQ6UX15 382 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 SLC30A10Q6XR72 485 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 Q6YL49 198 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 NOL8Q76FK4 1167 aaKnown RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 FAM9AQ8IZU1 332 aaPredicted RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 LCORLQ8N3X6 602 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 LNX2Q8N448 690 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 DNAJC5GQ8N7S2 189 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 PJA1Q8NG27 643 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 NEU4Q8WWR8 484 aaPredicted RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 LARP4BQ92615 738 aaKnown RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 ZC3H10Q96K80 434 aaKnown RBP4.71□□□□□ -1.66
CD44-233ENST00000531141 MSLNLQ96KJ4 702 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 WDR11Q9BZH6 1224 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 TTYH3Q9C0H2 523 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 SMOC2Q9H3U7 446 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 ARNT2Q9HBZ2 717 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 KIAA1586Q9HCI6 787 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 KCTD5Q9NXV2 234 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 STK32BQ9NY57 414 aa4.71□□□□□ -1.66
CD44-233ENST00000531141 SHOC2Q9UQ13 582 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms