RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MRPL58Q14197 206 aaKnown RBP9.02□□□□□ -0.97
CD44-232ENST00000531118 CTTNQ14247 550 aaKnown RBP9.02□□□□□ -0.97
CD44-232ENST00000531118 PTPAQ15257 358 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 EPHA7Q15375 998 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 FAM187BQ17R55 369 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 DCAF4L1Q3SXM0 396 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 FBXO43Q4G163 708 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 GPR158Q5T848 1215 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 EEF1DP3Q658K8 133 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 NAIF1Q69YI7 327 aaPredicted RBP9.02□□□□□ -0.97
CD44-232ENST00000531118 NCAPH2Q6IBW4 605 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 GAREM2Q75VX8 874 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 ARMCX6Q7L4S7 300 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 RASSF3Q86WH2 238 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 DAGLBQ8NCG7 672 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 BEST2Q8NFU1 509 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 CRELD1Q96HD1 420 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 ADPGKQ9BRR6 497 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 RWDD1Q9H446 243 aaPredicted RBP9.02□□□□□ -0.97
CD44-232ENST00000531118 ZSWIM4Q9H7M6 989 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 RGL1Q9NZL6 768 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 TPCN1Q9ULQ1 816 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 NAP1L2Q9ULW6 460 aaPredicted RBP9.02□□□□□ -0.97
CD44-232ENST00000531118 MAFFQ9ULX9 164 aa9.02□□□□□ -0.97
CD44-232ENST00000531118 OTOL1A6NHN0 477 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 USO1O60763 962 aaKnown RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 IGHDP01880 384 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 FTH1P19P0C7X4 201 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 DRD1P21728 446 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 U2AF2P26368 475 aaKnown RBP eCLIP9.01□□□□□ -0.97
CD44-232ENST00000531118 SLC19A1P41440 591 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 EXOSC10Q01780 885 aaKnown RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 RUNX3Q13761 415 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 USP39Q53GS9 565 aaKnown RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 ARHGAP15Q53QZ3 475 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 PEAR1Q5VY43 1037 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 TRIM68Q6AZZ1 485 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 CCNI2Q6ZMN8 369 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 ZBTB8OSQ8IWT0 167 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 HDDC3Q8N4P3 179 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 ARMC2Q8NEN0 867 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 LRRN4Q8WUT4 740 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 ADAMTS14Q8WXS8 1223 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 EZH1Q92800 747 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 CNOT6LQ96LI5 555 aaKnown RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 CCDC43Q96MW1 224 aaKnown RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 RNF26Q9BY78 433 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 SMG9Q9H0W8 520 aaKnown RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 SLKQ9H2G2 1235 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 CRISPLD1Q9H336 500 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 FZD8Q9H461 694 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 GPRC5CQ9NQ84 441 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 MAP10Q9P2G4 905 aa9.01□□□□□ -0.97
CD44-232ENST00000531118 MBD1Q9UIS9 605 aaPredicted RBP9.01□□□□□ -0.97
CD44-232ENST00000531118 CCDC196A0A1B0GTZ2 297 aa9□□□□□ -0.97
CD44-232ENST00000531118 M0R2N6 131 aa9□□□□□ -0.97
CD44-232ENST00000531118 TNFRSF10BO14763 440 aa9□□□□□ -0.97
CD44-232ENST00000531118 OPHN1O60890 802 aa9□□□□□ -0.97
CD44-232ENST00000531118 ARSAP15289 507 aa9□□□□□ -0.97
CD44-232ENST00000531118 GABRR2P28476 465 aa9□□□□□ -0.97
CD44-232ENST00000531118 WEE1P30291 646 aa9□□□□□ -0.97
CD44-232ENST00000531118 EPHB3P54753 998 aa9□□□□□ -0.97
CD44-232ENST00000531118 NLRP5P59047 1200 aa9□□□□□ -0.97
CD44-232ENST00000531118 AKAP17AQ02040 695 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 PRPF4BQ13523 1007 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 HNRNPDQ14103 355 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 NECTIN1Q15223 517 aa9□□□□□ -0.97
CD44-232ENST00000531118 INF2Q27J81 1249 aa9□□□□□ -0.97
CD44-232ENST00000531118 LARP1BQ659C4 914 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 PPP4R3AQ6IN85 833 aa9□□□□□ -0.97
CD44-232ENST00000531118 ANO7Q6IWH7 933 aa9□□□□□ -0.97
CD44-232ENST00000531118 SLC23A3Q6PIS1 610 aa9□□□□□ -0.97
CD44-232ENST00000531118 SYT12Q8IV01 421 aa9□□□□□ -0.97
CD44-232ENST00000531118 MDGA1Q8NFP4 955 aa9□□□□□ -0.97
CD44-232ENST00000531118 SUSD3Q96L08 255 aa9□□□□□ -0.97
CD44-232ENST00000531118 FAM20AQ96MK3 541 aa9□□□□□ -0.97
CD44-232ENST00000531118 PGLYRP2Q96PD5 576 aa9□□□□□ -0.97
CD44-232ENST00000531118 P2RY13Q9BPV8 354 aa9□□□□□ -0.97
CD44-232ENST00000531118 FAM83CQ9BQN1 747 aa9□□□□□ -0.97
CD44-232ENST00000531118 GTPBP2Q9BX10 602 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 SLC26A6Q9BXS9 759 aa9□□□□□ -0.97
CD44-232ENST00000531118 CCDC113Q9H0I3 377 aa9□□□□□ -0.97
CD44-232ENST00000531118 ATXN3LQ9H3M9 355 aa9□□□□□ -0.97
CD44-232ENST00000531118 EBF3Q9H4W6 596 aa9□□□□□ -0.97
CD44-232ENST00000531118 FBRSL1Q9HCM7 1045 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 FSCN3Q9NQT6 498 aa9□□□□□ -0.97
CD44-232ENST00000531118 THG1LQ9NWX6 298 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 PCDHA4Q9UN74 947 aa9□□□□□ -0.97
CD44-232ENST00000531118 USP20Q9Y2K6 914 aa9□□□□□ -0.97
CD44-232ENST00000531118 NUB1Q9Y5A7 615 aa9□□□□□ -0.97
CD44-232ENST00000531118 MYO18AQ92614 2054 aaKnown RBP9□□□□□ -0.97
CD44-232ENST00000531118 SMIM28A0A1B0GU29 152 aa8.99□□□□□ -0.97
CD44-232ENST00000531118 ATXN7O15265 892 aaPredicted RBP8.99□□□□□ -0.97
CD44-232ENST00000531118 MARCH6O60337 910 aa8.99□□□□□ -0.97
CD44-232ENST00000531118 LYPLA2O95372 231 aa8.99□□□□□ -0.97
CD44-232ENST00000531118 CD2BP2O95400 341 aaKnown RBP8.99□□□□□ -0.97
CD44-232ENST00000531118 FGF19O95750 216 aa8.99□□□□□ -0.97
CD44-232ENST00000531118 CFIP05156 583 aa8.99□□□□□ -0.97
CD44-232ENST00000531118 OR4Q2P0C623 313 aa8.99□□□□□ -0.97
CD44-232ENST00000531118 MCM4P33991 863 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms