RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TGM1P22735 817 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 CXCL12P48061 93 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 KPNA1P52294 538 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 CYP4F8P98187 520 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 PLCB2Q00722 1185 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 SATB1Q01826 763 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 KCNA1Q09470 495 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 RSPO4Q2I0M5 234 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 SV2CQ496J9 727 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 TXNDC11Q6PKC3 985 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 RALGPS2Q86X27 583 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 GPIHBP1Q8IV16 184 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 THEM5Q8N1Q8 247 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 CELF5Q8N6W0 485 aaKnown RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 FAM200AQ8TCP9 573 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 BPIFB1Q8TDL5 484 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 DNAJC19Q96DA6 116 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 ZFYVE19Q96K21 471 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 ZNF560Q96MR9 790 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 MRPL44Q9H9J2 332 aaKnown RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 OLFML3Q9NRN5 406 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 RBM12Q9NTZ6 932 aaKnown RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 GTSE1Q9NYZ3 720 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 ZMYM5Q9UJ78 669 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 EXOC7Q9UPT5 735 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 FRMD3A2A2Y4 597 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 OBSL1O75147 1896 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 GAP43P17677 238 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 PNPLA4P41247 253 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 CDR1P51861 262 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 WNT7BP56706 349 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 LMNB2Q03252 620 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 RESTQ13127 1097 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 DGKKQ5KSL6 1271 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 L1TD1Q5T7N2 865 aaKnown RBP12.24□□□□□ -0.45
VPS28-214ENST00000531032 RRAGBQ5VZM2 374 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 TMEM150AQ86TG1 271 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 BRSK2Q8IWQ3 736 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 DCP1BQ8IZD4 617 aaKnown RBP12.24□□□□□ -0.45
VPS28-214ENST00000531032 CLIC6Q96NY7 704 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 GCNAQ96QF7 691 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 ACCSQ96QU6 501 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 SLC46A2Q9BY10 475 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 ABI2Q9NYB9 513 aaPredicted RBP12.24□□□□□ -0.45
VPS28-214ENST00000531032 GMEB2Q9UKD1 530 aa12.24□□□□□ -0.45
VPS28-214ENST00000531032 MORC2Q9Y6X9 1032 aaPredicted RBP12.24□□□□□ -0.45
VPS28-214ENST00000531032 PRR5-ARHGAP8B1AHC4 643 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 K7ESF4 209 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 HMGA1P17096 107 aaKnown RBP12.23□□□□□ -0.45
VPS28-214ENST00000531032 SDHBP21912 280 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 TXLNAP40222 546 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 CASP5P51878 434 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 ARHGAP8P85298 464 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 TNK2Q07912 1038 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 CCINQ13939 588 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 LAIR1Q6GTX8 287 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 Q6ZS52 159 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 SV2BQ7L1I2 683 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 CMTM8Q8IZV2 173 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 SYNPOQ8N3V7 929 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 PDCL2Q8N4E4 241 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 C1orf127Q8N9H9 656 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 ZSWIM2Q8NEG5 633 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 CXorf38Q8TB03 319 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 GIPC2Q8TF65 315 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 LEO1Q8WVC0 666 aaPredicted RBP12.23□□□□□ -0.45
VPS28-214ENST00000531032 FAM213AQ9BRX8 229 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 PARD6AQ9NPB6 346 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 TMLHEQ9NVH6 421 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 TBC1D7Q9P0N9 293 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 RAB23Q9ULC3 237 aa12.23□□□□□ -0.45
VPS28-214ENST00000531032 NCOR2Q9Y618 2525 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 SOBPA7XYQ1 873 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 GCNT3O95395 438 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 LDHAP00338 332 aaKnown RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 F11P03951 625 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 ITGB3P05106 788 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 SYT1P21579 422 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 GARTP22102 1010 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 DDX6P26196 483 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS28-214ENST00000531032 POLR2BP30876 1174 aaKnown RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 HOXA6P31267 233 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 CNR2P34972 360 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 NLRP12P59046 1061 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 TFAMQ00059 246 aaKnown RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 TSPY1Q01534 308 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 DMWDQ09019 674 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 ALCAMQ13740 583 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 PON2Q15165 354 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 TAF12Q16514 161 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 NFE2Q16621 373 aaPredicted RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 ITPRIPL2Q3MIP1 535 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 FAM173BQ6P4H8 233 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 CCDC73Q6ZRK6 1079 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 LRRC52Q8N7C0 313 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 TTC8Q8TAM2 541 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 SAAL1Q96ER3 474 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 PKMYT1Q99640 499 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 FAM83CQ9BQN1 747 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 ACBD6Q9BR61 282 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms