RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 LIMS2Q7Z4I7 341 aa22.13■■□□□ 1.13
VPS28-206ENST00000526734 SIX5Q8N196 739 aa22.13■■□□□ 1.13
VPS28-206ENST00000526734 ELSPBP1Q96BH3 223 aa22.13■■□□□ 1.13
VPS28-206ENST00000526734 SEPT5Q99719 369 aaPredicted RBP22.13■■□□□ 1.13
VPS28-206ENST00000526734 IRF2BPLQ9H1B7 796 aa22.13■■□□□ 1.13
VPS28-206ENST00000526734 NOTCH4Q99466 2003 aa22.13■■□□□ 1.13
VPS28-206ENST00000526734 ZDBF2Q9HCK1 2354 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 NR3C1P04150 777 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 PRR29P0C7W0 189 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 HAPLN1P10915 354 aaPredicted RBP22.12■■□□□ 1.13
VPS28-206ENST00000526734 ATICP31939 592 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 CCR2P41597 374 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 VCPP55072 806 aaKnown RBP22.12■■□□□ 1.13
VPS28-206ENST00000526734 NFIL3Q16649 462 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 SOWAHAQ2M3V2 549 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 LRRTM3Q86VH5 581 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 TMC8Q8IU68 726 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 HS6ST3Q8IZP7 471 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 GUF1Q8N442 669 aaKnown RBP22.12■■□□□ 1.13
VPS28-206ENST00000526734 GPR152Q8TDT2 470 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 E2F7Q96AV8 911 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 TCEAL4Q96EI5 215 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 FAM84AQ96KN4 292 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 LRRC3Q9BY71 257 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 GTPBP4Q9BZE4 634 aaKnown RBP22.12■■□□□ 1.13
VPS28-206ENST00000526734 RMND1Q9NWS8 449 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 ABI2Q9NYB9 513 aaPredicted RBP22.12■■□□□ 1.13
VPS28-206ENST00000526734 ZMYM5Q9UJ78 669 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 CIZ1Q9ULV3 898 aaPredicted RBP22.12■■□□□ 1.13
VPS28-206ENST00000526734 TRIOO75962 3097 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 TCHHQ07283 1943 aa22.12■■□□□ 1.13
VPS28-206ENST00000526734 MAPK13O15264 365 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 AOC1P19801 751 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 PTPN5P54829 565 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 CLDN10P78369 228 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 TRPC3Q13507 836 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 MAPRE1Q15691 268 aaKnown RBP22.11■■□□□ 1.13
VPS28-206ENST00000526734 DNAJB7Q7Z6W7 309 aaPredicted RBP22.11■■□□□ 1.13
VPS28-206ENST00000526734 FMR1NBQ8N0W7 255 aaPredicted RBP22.11■■□□□ 1.13
VPS28-206ENST00000526734 TTC9BQ8N6N2 239 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 FAM200AQ8TCP9 573 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 TMC2Q8TDI7 906 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 PARD3BQ8TEW8 1205 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 SMARCD2Q92925 531 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 SYAP1Q96A49 352 aaPredicted RBP22.11■■□□□ 1.13
VPS28-206ENST00000526734 FUBP3Q96I24 572 aaKnown RBP eCLIP22.11■■□□□ 1.13
VPS28-206ENST00000526734 SHDQ96IW2 340 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 ASB16Q96NS5 453 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 TRPV4Q9HBA0 871 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 ZFP14Q9HCL3 533 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 ARHGEF3Q9NR81 526 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 HOOK1Q9UJC3 728 aaKnown RBP22.11■■□□□ 1.13
VPS28-206ENST00000526734 FRMD4BQ9Y2L6 1034 aa22.11■■□□□ 1.13
VPS28-206ENST00000526734 MOSPD3O75425 235 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 RFX1P22670 979 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 WARSP23381 471 aaKnown RBP22.1■■□□□ 1.13
VPS28-206ENST00000526734 CDC25CP30307 473 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 RPL10AP62906 217 aaKnown RBP22.1■■□□□ 1.13
VPS28-206ENST00000526734 FAM160A1Q05DH4 1040 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 TAF12Q16514 161 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 CFAP221Q4G0U5 840 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 ARHGAP15Q53QZ3 475 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 CWF19L1Q69YN2 538 aaKnown RBP22.1■■□□□ 1.13
VPS28-206ENST00000526734 PHLDB3Q6NSJ2 640 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 FLCNQ8NFG4 579 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 SHKBP1Q8TBC3 707 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 DEPDC1BQ8WUY9 529 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 DOCK6Q96HP0 2047 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 GCNAQ96QF7 691 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 KXD1Q9BQD3 176 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 RPP25Q9BUL9 199 aaKnown RBP22.1■■□□□ 1.13
VPS28-206ENST00000526734 CDH9Q9ULB4 789 aa22.1■■□□□ 1.13
VPS28-206ENST00000526734 MUC6Q6W4X9 2439 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 PHACTR2O75167 634 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 TACC1O75410 805 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 ATF6P18850 670 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 RPL13P26373 211 aaKnown RBP22.09■■□□□ 1.13
VPS28-206ENST00000526734 TNNC1P63316 161 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 GPC5P78333 572 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 ENPEPQ07075 957 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 FAM78AQ5JUQ0 283 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 C4orf50Q6ZRC1 276 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 TIGD1Q96MW7 591 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 MMS19Q96T76 1030 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 PKMYT1Q99640 499 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 GZF1Q9H116 711 aaPredicted RBP22.09■■□□□ 1.13
VPS28-206ENST00000526734 SLITRK6Q9H5Y7 841 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 VRTNQ9H8Y1 702 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 KMT2EQ8IZD2 1858 aa22.09■■□□□ 1.13
VPS28-206ENST00000526734 A0A1W2PRU2 124 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 KRBA1A5PL33 1030 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 SOAT2O75908 522 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 SMC2O95347 1197 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 CSH1P0DML2 217 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 CSH2P0DML3 217 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 NPR3P17342 541 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 FCARP24071 287 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 PRKCQQ04759 706 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 BIRC3Q13489 604 aa22.08■■□□□ 1.13
VPS28-206ENST00000526734 SNW1Q13573 536 aaKnown RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms