RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TPGS2Q68CL5 300 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 ISM2Q6H9L7 571 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 PDZD4Q76G19 769 aaPredicted RBP10.92□□□□□ -0.66
VPS28-204ENST00000526054 CBWD2Q8IUF1 395 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 TCEAL8Q8IYN2 117 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 ELMOD1Q8N336 334 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 ZSWIM2Q8NEG5 633 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 APPL2Q8NEU8 664 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 CACTINQ8WUQ7 758 aaKnown RBP10.92□□□□□ -0.66
VPS28-204ENST00000526054 DHTKD1Q96HY7 919 aaPredicted RBP10.92□□□□□ -0.66
VPS28-204ENST00000526054 SUSD3Q96L08 255 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 OSBPL6Q9BZF3 934 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 DMAC2Q9NW81 257 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 FRMD4BQ9Y2L6 1034 aa10.92□□□□□ -0.66
VPS28-204ENST00000526054 TSC2P49815 1807 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 BICDL2A1A5D9 508 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 FAM170BA6NMN3 283 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 ZNF197O14709 1029 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 TBC1D4O60343 1298 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 SEC24AO95486 1093 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 TMEM191BP0C7N4 346 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 CD72P21854 359 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 CCNE1P24864 410 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 TARSP26639 723 aaKnown RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 MAGEA9P43362 315 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 TFAMQ00059 246 aaKnown RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 CYP24A1Q07973 514 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 ADCY1Q08828 1119 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 MRPL58Q14197 206 aaKnown RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 GRM2Q14416 872 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 PSMD6Q15008 389 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 ZBTB6Q15916 424 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 PRSS36Q5K4E3 855 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 CCDC183Q5T5S1 534 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 SPATA1Q5VX52 437 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 CEP135Q66GS9 1140 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 IQCEQ6IPM2 695 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 CENPPQ6IPU0 288 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 KLHL10Q6JEL2 608 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 ERMP1Q7Z2K6 904 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 USP37Q86T82 979 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 EFCAB13Q8IY85 973 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 MAML2Q8IZL2 1156 aaPredicted RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 RDH13Q8NBN7 331 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 DNASE1L2Q92874 299 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 SYAP1Q96A49 352 aaPredicted RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 ELSPBP1Q96BH3 223 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 TCEAL4Q96EI5 215 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 ANKRD36BP1Q96IX9 119 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 FNBP1Q96RU3 617 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 PLA2G2FQ9BZM2 168 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 PDE11AQ9HCR9 933 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 HEBP1Q9NRV9 189 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 FBXO4Q9UKT5 387 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 PCDHB8Q9UN66 801 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 MRPS17Q9Y2R5 130 aaKnown RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 MTF2Q9Y483 593 aaPredicted RBP10.91□□□□□ -0.66
VPS28-204ENST00000526054 SCN1AP35498 2009 aa10.91□□□□□ -0.66
VPS28-204ENST00000526054 CETN3O15182 167 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 MAPK13O15264 365 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 SPTLC1O15269 473 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 TNNC2P02585 160 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 DLATP10515 647 aaKnown RBP10.9□□□□□ -0.66
VPS28-204ENST00000526054 BMP6P22004 513 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 PAX3P23760 479 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 FCARP24071 287 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 FKBP3Q00688 224 aaKnown RBP10.9□□□□□ -0.66
VPS28-204ENST00000526054 YWHAHQ04917 246 aaPredicted RBP10.9□□□□□ -0.66
VPS28-204ENST00000526054 TWF1Q12792 350 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 PAK1Q13153 545 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ADAM9Q13443 819 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 NFKBIBQ15653 356 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ZNF528Q3MIS6 628 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 FAM78AQ5JUQ0 283 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 CYP4A22Q5TCH4 519 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 TANGO2Q6ICL3 276 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ZNF852Q6ZMS4 543 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 WDR49Q8IV35 697 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 KIAA2013Q8IYS2 634 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 LEMD2Q8NC56 503 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 NELFBQ8WX92 580 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 RUBCNQ92622 972 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 CCDC127Q96BQ5 260 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ZNF560Q96MR9 790 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ASB16Q96NS5 453 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 CGRRF1Q99675 332 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 BRD9Q9H8M2 597 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ZFP14Q9HCL3 533 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 ASAH2Q9NR71 780 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 DPP3Q9NY33 737 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 AFF4Q9UHB7 1163 aaKnown RBP10.9□□□□□ -0.66
VPS28-204ENST00000526054 DACH1Q9UI36 760 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 CTNND2Q9UQB3 1225 aa10.9□□□□□ -0.66
VPS28-204ENST00000526054 R3HCC1Q9Y3T6 440 aaKnown RBP10.9□□□□□ -0.66
VPS28-204ENST00000526054 DNAH14Q0VDD8 3507 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 ZNF292O60281 2723 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 OTOGLQ3ZCN5 2332 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 TRIM49BA6NDI0 452 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 PPP1R3GB7ZBB8 358 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 NCAM2O15394 837 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms