RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 CRAMP1Q96RY5 1269 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 SIK2Q9H0K1 926 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 TMEM60Q9H2L4 133 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 KLHL11Q9NVR0 708 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 FAM50BQ9Y247 325 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 CDC42BPAQ5VT25 1732 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 NEO1Q92859 1461 aa4.79□□□□□ -1.64
CD44-219ENST00000525685 FRMPD1Q5SYB0 1578 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 MAP3K1Q13233 1512 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 CDC42BPBQ9Y5S2 1711 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 A0A088AWK7 358 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 PIPSLA2A3N6 862 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 ZNF785A8K8V0 405 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 MYO1CO00159 1063 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 PPFIA2O75334 1257 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 SPDEFO95238 335 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 AHSGP02765 367 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 CFIP05156 583 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 MYL1P05976 194 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 HLA-DOAP06340 250 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 ELANEP08246 267 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 KITP10721 976 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 TGM1P22735 817 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 USP14P54578 494 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 FAM193AP78312 1265 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 NKX6-1P78426 367 aaPredicted RBP4.78□□□□□ -1.64
CD44-219ENST00000525685 ZNF844Q08AG5 666 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 TP53BP2Q13625 1128 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 CNN3Q15417 329 aaKnown RBP4.78□□□□□ -1.64
CD44-219ENST00000525685 RNF220Q5VTB9 566 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 ZNF365Q70YC5 407 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 PPP1R3BQ86XI6 285 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 LCORLQ8N3X6 602 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 LINC00476Q8WZB0 136 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 PNKPQ96T60 521 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 LRFN3Q9BTN0 628 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 MRPL46Q9H2W6 279 aaKnown RBP4.78□□□□□ -1.64
CD44-219ENST00000525685 RNPEPQ9H4A4 650 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 SYNPO2LQ9H987 977 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 RSAD1Q9HA92 442 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.78□□□□□ -1.64
CD44-219ENST00000525685 PIH1D1Q9NWS0 290 aaKnown RBP4.78□□□□□ -1.64
CD44-219ENST00000525685 FAM30AQ9NZY2 134 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 RNF181Q9P0P0 153 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 TPCN1Q9ULQ1 816 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 CDYLQ9Y232 598 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 NOX1Q9Y5S8 564 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.78□□□□□ -1.64
CD44-219ENST00000525685 PLCH2O75038 1416 aa4.78□□□□□ -1.64
CD44-219ENST00000525685 SUPT6HQ7KZ85 1726 aaKnown RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 ABCC1P33527 1531 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ARHGAP5Q13017 1502 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ITSN2Q9NZM3 1697 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 FANCAO15360 1455 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 LRRC9Q6ZRR7 1453 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 NT5C1B-RDH14C9J2C7 533 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 GOLIM4O00461 696 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 TPP1O14773 563 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 PHGDHO43175 533 aaKnown RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 MAP4K4O95819 1239 aaPredicted RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 GPANK1O95872 356 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ANXA1P04083 346 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 RARBP10826 455 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 EGR2P11161 476 aaPredicted RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 SLC7A1P30825 629 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 GNALP38405 381 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ZNF135P52742 658 aaPredicted RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 SOX8P57073 446 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 TBX4P57082 545 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 EXOSC9Q06265 439 aaKnown RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 RESTQ13127 1097 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ARMC6Q6NXE6 501 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 OLFML1Q6UWY5 402 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 MAEAQ7L5Y9 396 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 CCDC146Q8IYE0 955 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 SUPT20HQ8NEM7 779 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 PLBD2Q8NHP8 589 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 NUP133Q8WUM0 1156 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ASB10Q8WXI3 467 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 MARS2Q96GW9 593 aaKnown RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 COQ10AQ96MF6 247 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 NT5C1BQ96P26 610 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 ZDHHC8Q9ULC8 765 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 SLC45A2Q9UMX9 530 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 EPN1Q9Y6I3 576 aaPredicted RBP4.77□□□□□ -1.65
CD44-219ENST00000525685 SAMD9LQ8IVG5 1584 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 RICTORQ6R327 1708 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 MTUS2Q5JR59 1369 aa4.77□□□□□ -1.65
CD44-219ENST00000525685 NCOA2Q15596 1464 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 A0A1B0GTW7 788 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 TBC1D4O60343 1298 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 PQBP1O60828 265 aaKnown RBP4.76□□□□□ -1.65
CD44-219ENST00000525685 NUDT3O95989 172 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 ZBED1O96006 694 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 ZKSCAN1P17029 563 aaPredicted RBP4.76□□□□□ -1.65
CD44-219ENST00000525685 HDCP19113 662 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 GCSHP23434 173 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 SLC6A4P31645 630 aa4.76□□□□□ -1.65
CD44-219ENST00000525685 AVPR1BP47901 424 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms