RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SOX8P57073 446 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 RAB1AP62820 205 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 TUBB3Q13509 450 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 PTPRRQ15256 657 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 CCDC157Q569K6 752 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 VPS53Q5VIR6 699 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 FBXO42Q6P3S6 717 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 DENND1CQ8IV53 801 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 FAM109AQ8N4B1 249 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 PCSK9Q8NBP7 692 aaKnown RBP5.14□□□□□ -1.59
CD44-217ENST00000525348 SLC35G2Q8TBE7 412 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 BRIX1Q8TDN6 353 aaKnown RBP5.14□□□□□ -1.59
CD44-217ENST00000525348 MRGPRX1Q96LB2 322 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 ACO2Q99798 780 aaKnown RBP5.14□□□□□ -1.59
CD44-217ENST00000525348 DUSP26Q9BV47 211 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 AMBRA1Q9C0C7 1298 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 NMRK2Q9NPI5 230 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 IL17RBQ9NRM6 502 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 CPA4Q9UI42 421 aa5.14□□□□□ -1.59
CD44-217ENST00000525348 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 H3BML4 177 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 GNAI2P04899 355 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 HSPA6P17066 643 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 IL12RB1P42701 662 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 GCLCP48506 637 aaPredicted RBP5.13□□□□□ -1.59
CD44-217ENST00000525348 CACNA2D1P54289 1103 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 ERCC6LQ2NKX8 1250 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 RBM20Q5T481 1227 aaKnown RBP5.13□□□□□ -1.59
CD44-217ENST00000525348 KAZNQ674X7 775 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 RD3Q7Z3Z2 195 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 BOLLQ8N9W6 283 aaKnown RBP5.13□□□□□ -1.59
CD44-217ENST00000525348 ZBTB34Q8NCN2 500 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 B3GALNT2Q8NCR0 500 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 CAGE1Q8TC20 777 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 ZNF764Q96H86 408 aaPredicted RBP5.13□□□□□ -1.59
CD44-217ENST00000525348 PGBD1Q96JS3 809 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 OSBPL9Q96SU4 736 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 KLK15Q9H2R5 256 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 KIAA1586Q9HCI6 787 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 SERHLQ9NQF3 203 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 SEMA4GQ9NTN9 838 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 HESX1Q9UBX0 185 aa5.13□□□□□ -1.59
CD44-217ENST00000525348 NOB1Q9ULX3 412 aaKnown RBP5.13□□□□□ -1.59
CD44-217ENST00000525348 A0A088AWK7 358 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 UNC5CO95185 931 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 SCGB1D2O95969 90 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 PDHA1P08559 390 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 PCSK6P29122 969 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 GRIA3P42263 894 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 KHDC1LQ5JSQ8 128 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 FAM160B1Q5W0V3 765 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 OVCH2Q7RTZ1 564 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 CAMKK1Q8N5S9 505 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 DDX17Q92841 729 aaKnown RBP5.12□□□□□ -1.59
CD44-217ENST00000525348 RUNDC1Q96C34 613 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 SLC46A1Q96NT5 459 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 P2RX7Q99572 595 aaKnown RBP5.12□□□□□ -1.59
CD44-217ENST00000525348 HEPHQ9BQS7 1158 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 SIK2Q9H0K1 926 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 DKK3Q9UBP4 350 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 RAD54BQ9Y620 910 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 COX11Q9Y6N1 276 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 KAT6AQ92794 2004 aa5.12□□□□□ -1.59
CD44-217ENST00000525348 PCSK5Q92824 1860 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 LRRC3CA6NJW4 275 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 LINC00473A8K010 186 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 EIF5BO60841 1220 aaKnown RBP5.11□□□□□ -1.59
CD44-217ENST00000525348 PPFIA2O75334 1257 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 IGLV2-14P01704 120 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 NPR1P16066 1061 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 ITGALP20701 1170 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 NXPH1P58417 271 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 SP2Q02086 613 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 ITIH3Q06033 890 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 GTF2H3Q13889 308 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 NFE2Q16621 373 aaPredicted RBP5.11□□□□□ -1.59
CD44-217ENST00000525348 NBPF8Q3BBV2 869 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 DPY19L2P1Q6NXN4 242 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 TMEM108Q6UXF1 575 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 ARHGEF25Q86VW2 580 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 RFKQ969G6 155 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 ACTRT3Q9BYD9 372 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 TPSD1Q9BZJ3 242 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 TTYH3Q9C0H2 523 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 ZMAT3Q9HA38 289 aaKnown RBP5.11□□□□□ -1.59
CD44-217ENST00000525348 ATP6V0A4Q9HBG4 840 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 KLC4Q9NSK0 619 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 ASB6Q9NWX5 421 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 EID1Q9Y6B2 187 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.11□□□□□ -1.59
CD44-217ENST00000525348 SPATA31A6Q5VVP1 1343 aa5.11□□□□□ -1.59
CD44-217ENST00000525348 TRIAP1O43715 76 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 TUSC2O75896 110 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 FBLP22087 321 aaKnown RBP5.1□□□□□ -1.59
CD44-217ENST00000525348 ITPKBP27987 946 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 CD6P30203 668 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 AGFG1P52594 562 aaKnown RBP5.1□□□□□ -1.59
CD44-217ENST00000525348 FGL2Q14314 439 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 SWSAP1Q6NVH7 229 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms