RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	PNPO	Q9NVS9	261 aa		3.03	□□□□□ -1.92
CD44-216	ENST00000525293	ARPP21	Q9UBL0	812 aa	Predicted RBP	3.03	□□□□□ -1.92
CD44-216	ENST00000525293	IP6K2	Q9UHH9	426 aa		3.03	□□□□□ -1.92
CD44-216	ENST00000525293	ZDHHC8	Q9ULC8	765 aa		3.03	□□□□□ -1.92
CD44-216	ENST00000525293	NOP58	Q9Y2X3	529 aa	Known RBP	3.03	□□□□□ -1.92
CD44-216	ENST00000525293	ENTPD2	Q9Y5L3	495 aa		3.03	□□□□□ -1.92
CD44-216	ENST00000525293	RAD54B	Q9Y620	910 aa		3.03	□□□□□ -1.92
CD44-216	ENST00000525293	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	3.03	□□□□□ -1.92
CD44-216	ENST00000525293	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	ANKRD62	A6NC57	917 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293		M0QYG6	137 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	PROP1	O75360	226 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	RBMXL2	O75526	392 aa	Known RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	GNAI2	P04899	355 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	NR2F6	P10588	404 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	ITGAL	P20701	1170 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	GPD1	P21695	349 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	GCLC	P48506	637 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	TOB1	P50616	345 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	NEK2	P51955	445 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	RBM20	Q5T481	1227 aa	Known RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	VPS53	Q5VIR6	699 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	RASAL3	Q86YV0	1011 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	PCSK9	Q8NBP7	692 aa	Known RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	FAM46D	Q8NEK8	389 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	IPO4	Q8TEX9	1081 aa	Known RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	HOOK2	Q96ED9	719 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	MVB12A	Q96EY5	273 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	HAPLN3	Q96S86	360 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	OSBPL9	Q96SU4	736 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	BRINP2	Q9C0B6	783 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	SIK2	Q9H0K1	926 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	DKK3	Q9UBP4	350 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	FRMD4B	Q9Y2L6	1034 aa		3.02	□□□□□ -1.93
CD44-216	ENST00000525293	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	3.02	□□□□□ -1.93
CD44-216	ENST00000525293	LOC102724159	A0A0B4J2E5	919 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	SOAT2	O75908	522 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	URI1	O94763	535 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	TTLL1	O95922	423 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PDHA1	P08559	390 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PF4V1	P10720	104 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	HDC	P19113	662 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	VCAM1	P19320	739 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	WT1	P19544	449 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	AKAP5	P24588	427 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	LMO1	P25800	156 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	ITPKB	P27987	946 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	CD6	P30203	668 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	NKX6-1	P78426	367 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	EXOSC10	Q01780	885 aa	Known RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	EXOSC9	Q06265	439 aa	Known RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	TCF15	Q12870	199 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	BMPR2	Q13873	1038 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	BOP1	Q14137	746 aa	Known RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PLS1	Q14651	629 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PWP2	Q15269	919 aa	Known RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	TBCC	Q15814	346 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	FAM153C	Q494X1	144 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	FAM160B1	Q5W0V3	765 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	TMEM108	Q6UXF1	575 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	ZNF788	Q6ZQV5	615 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PPP1R32	Q7Z5V6	425 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	AMIGO2	Q86SJ2	522 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	GRAMD1C	Q8IYS0	662 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	FAM9B	Q8IZU0	186 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	CAMKK1	Q8N5S9	505 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	BRIX1	Q8TDN6	353 aa	Known RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	DDX17	Q92841	729 aa	Known RBP	3.01	□□□□□ -1.93
CD44-216	ENST00000525293	HPS3	Q969F9	1004 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	RFK	Q969G6	155 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	FKBP10	Q96AY3	582 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	SARAF	Q96BY9	339 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	FAM136A	Q96C01	138 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	SLC35A4	Q96G79	324 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PBK	Q96KB5	322 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	FAM167A	Q96KS9	214 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	SLC46A1	Q96NT5	459 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	ALG8	Q9BVK2	526 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	TTYH3	Q9C0H2	523 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	ARMT1	Q9H993	441 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	TCF7L1	Q9HCS4	588 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PCDHA6	Q9UN73	950 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	ANKRD6	Q9Y2G4	727 aa		3.01	□□□□□ -1.93
CD44-216	ENST00000525293	PPM1D	O15297	605 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	ALDH1L1	O75891	902 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	DNAJB5	O75953	348 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	ALDH2	P05091	517 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	CT47B1	P0C2W7	299 aa	Predicted RBP	3	□□□□□ -1.93
CD44-216	ENST00000525293	ZFX	P17010	805 aa	Predicted RBP	3	□□□□□ -1.93
CD44-216	ENST00000525293	KCNJ5	P48544	419 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	SOX10	P56693	466 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	SOX8	P57073	446 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	PROK1	P58294	105 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	SET	Q01105	290 aa	Predicted RBP	3	□□□□□ -1.93
CD44-216	ENST00000525293	SRSF4	Q08170	494 aa	Known RBP	3	□□□□□ -1.93
CD44-216	ENST00000525293	FOXF2	Q12947	444 aa		3	□□□□□ -1.93
CD44-216	ENST00000525293	EIF2B5	Q13144	721 aa	Known RBP	3	□□□□□ -1.93
CD44-216	ENST00000525293	OS9	Q13438	667 aa	Predicted RBP	3	□□□□□ -1.93
CD44-216	ENST00000525293	KHDC1L	Q5JSQ8	128 aa		3	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms