RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 DKC1O60832 514 aaKnown RBP eCLIP8.82□□□□□ -1
CSMD1-213ENST00000523488 SPAG7O75391 227 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 CYP11B2P19099 503 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 AMPD1P23109 780 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 PAX3P23760 479 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 TXNL4AP83876 142 aaKnown RBP8.82□□□□□ -1
CSMD1-213ENST00000523488 CCNIQ14094 377 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 NEK8Q86SG6 692 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 DHDDSQ86SQ9 333 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 SCUBE1Q8IWY4 988 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 UBL4BQ8N7F7 174 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 DNAJC1Q96KC8 554 aaKnown RBP8.82□□□□□ -1
CSMD1-213ENST00000523488 GREM2Q9H772 168 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 HDAC9Q9UKV0 1011 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 ALG6Q9Y672 507 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 SQORQ9Y6N5 450 aa8.82□□□□□ -1
CSMD1-213ENST00000523488 NDC80O14777 642 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 SULT1C4O75897 302 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 RSL1D1O76021 490 aaKnown RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 PDE5AO76074 875 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 CAMTA2O94983 1202 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 GABRB3P28472 473 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 PGM1P36871 562 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 SLC1A5Q15758 541 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TMEM266Q2M3C6 531 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 LETM2Q2VYF4 491 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 PCNX4Q63HM2 1172 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 MTDHQ86UE4 582 aaKnown RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 NEURL2Q9BR09 285 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TECP42680 631 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 SLC1A1P43005 524 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 AP2B1P63010 937 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TAZQ16635 292 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 DNAL1Q4LDG9 190 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 SFT2D3Q587I9 215 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 RAPH1Q70E73 1250 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 SYT2Q8N9I0 419 aaPredicted RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 ACTRT2Q8TDY3 377 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 UHRF1Q96T88 793 aaPredicted RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 DCLK3Q9C098 648 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TSPYL2Q9H2G4 693 aaPredicted RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 UTP6Q9NYH9 597 aaKnown RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 TMOD4Q9NZQ9 345 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TBC1D7Q9P0N9 293 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 LRP2BPQ9P2M1 347 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 CCPG1Q9ULG6 757 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 A0A0G2JND7 137 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 VCLP18206 1134 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 SLC9A1P19634 815 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 PROZP22891 400 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 PDE1BQ01064 536 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 EXOC3L4Q17RC7 722 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 LRRC36Q1X8D7 754 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 DEPDC1Q5TB30 811 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TRIM67Q6ZTA4 783 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TMC7Q7Z402 723 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 ZFP28Q8NHY6 868 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 DDI1Q8WTU0 396 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 GPKOWQ92917 476 aaPredicted RBP eCLIP8.81□□□□□ -1
CSMD1-213ENST00000523488 MRRFQ96E11 262 aaKnown RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 AVENQ9NQS1 362 aaPredicted RBP8.81□□□□□ -1
CSMD1-213ENST00000523488 ARHGEF38Q9NXL2 777 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 TMOD3Q9NYL9 352 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 PCDHB2Q9Y5E7 798 aa8.81□□□□□ -1
CSMD1-213ENST00000523488 IGKV6D-41A0A0C4DH26 115 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 MATN2O00339 956 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 KRT18P05783 430 aaKnown RBP8.8□□□□□ -1
CSMD1-213ENST00000523488 PYGMP11217 842 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 CA4P22748 312 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 PHKA2P46019 1235 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 ATP6V0D1P61421 351 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 RELAQ04206 551 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 PPP2R5CQ13362 524 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 CCNG2Q16589 344 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 SPTY2D1Q68D10 685 aaPredicted RBP8.8□□□□□ -1
CSMD1-213ENST00000523488 PACS1Q6VY07 963 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 CENPUQ71F23 418 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 DEPTORQ8TB45 409 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 KRT35Q92764 455 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 NPHS2Q9NP85 383 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 SLCO1B3Q9NPD5 702 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 SLC7A8Q9UHI5 535 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 R3HDM2Q9Y2K5 976 aaKnown RBP8.8□□□□□ -1
CSMD1-213ENST00000523488 AHDC1Q5TGY3 1603 aaPredicted RBP8.8□□□□□ -1
CSMD1-213ENST00000523488 A0A0G2JMZ2 1700 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 LRRC37A2A6NM11 1700 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 TCRBV7S2A1N4TA0A589 114 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 TRIM43BA6NCK2 446 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 DNAJA2O60884 412 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 BMP10O95393 424 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 ZNF12P17014 697 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 ZNF23P17027 643 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 STAT1P42224 750 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 MYBPC1Q00872 1141 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 ZNF423Q2M1K9 1284 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 TRIM71Q2Q1W2 868 aaKnown RBP8.8□□□□□ -1
CSMD1-213ENST00000523488 MYLK3Q32MK0 819 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 HAUS6Q7Z4H7 955 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 SATL1Q86VE3 508 aa8.8□□□□□ -1
CSMD1-213ENST00000523488 ABHD8Q96I13 439 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms