RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 P2RY13Q9BPV8 354 aa12.65□□□□□ -0.38
SDCBP-211ENST00000523441 PTPRHQ9HD43 1115 aa12.65□□□□□ -0.38
SDCBP-211ENST00000523441 DDX19AQ9NUU7 478 aaKnown RBP12.65□□□□□ -0.38
SDCBP-211ENST00000523441 MAFFQ9ULX9 164 aa12.65□□□□□ -0.38
SDCBP-211ENST00000523441 MAGED2Q9UNF1 606 aaPredicted RBP12.65□□□□□ -0.38
SDCBP-211ENST00000523441 GCN1Q92616 2671 aaKnown RBP12.65□□□□□ -0.38
SDCBP-211ENST00000523441 ITPR1Q14643 2758 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 ATXN2Q99700 1313 aaKnown RBP12.64□□□□□ -0.39
SDCBP-211ENST00000523441 ADAMTS20P59510 1910 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 CCDC163A0A0D9SF12 145 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 TMEM8BA6NDV4 472 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 OR6C75A6NL08 312 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 E9PMD0 336 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 JAK2O60674 1132 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 OR52Z1P0C646 297 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 CEACAM1P13688 526 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 NOLC1Q14978 699 aaKnown RBP eCLIP12.64□□□□□ -0.39
SDCBP-211ENST00000523441 KARSQ15046 597 aaKnown RBP12.64□□□□□ -0.39
SDCBP-211ENST00000523441 ANO7Q6IWH7 933 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 CMTM8Q8IZV2 173 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 BEST2Q8NFU1 509 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 TSTD1Q8NFU3 115 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 BICD1Q96G01 975 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 TRPC7Q9HCX4 862 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 FSCN3Q9NQT6 498 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 OBP2AQ9NY56 170 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 WASF3Q9UPY6 502 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 ASB3Q9Y575 518 aa12.64□□□□□ -0.39
SDCBP-211ENST00000523441 ANTXRLA6NF34 631 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 M0QZQ0 153 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 CDX4O14627 284 aaPredicted RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 TRDMT1O14717 391 aaKnown RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 OAZ2O95190 189 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 FGF19O95750 216 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 ATF6P18850 670 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 CDC25CP30307 473 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 TNFSF9P41273 254 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 SIM1P81133 766 aaPredicted RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 STRN3Q13033 797 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 USP39Q53GS9 565 aaKnown RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 C2orf27AQ580R0 203 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 SDHAF4Q5VUM1 108 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 TXNDC8Q6A555 127 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 CCDC33Q8N5R6 958 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 OR10T2Q8NGX3 314 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 RIN3Q8TB24 985 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 SNX29Q8TEQ0 813 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 USP13Q92995 863 aaPredicted RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 FAM83CQ9BQN1 747 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 RUSC1Q9BVN2 902 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 IL21Q9HBE4 155 aa12.63□□□□□ -0.39
SDCBP-211ENST00000523441 ABI2Q9NYB9 513 aaPredicted RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 ASCC3Q8N3C0 2202 aaKnown RBP12.63□□□□□ -0.39
SDCBP-211ENST00000523441 SETXQ7Z333 2677 aaKnown RBP12.62□□□□□ -0.39
SDCBP-211ENST00000523441 ABLIM1O14639 778 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 MAP3K13O43283 966 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 ODC1P11926 461 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 DRD1P21728 446 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 PROZP22891 400 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 GJA4P35212 333 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 PPP2R3AQ06190 1150 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 NBR1Q14596 966 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 TRIM61Q5EBN2 209 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 HAUS3Q68CZ6 603 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
SDCBP-211ENST00000523441 DAW1Q8N136 415 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 DEFB119Q8N690 84 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 SPRYD3Q8NCJ5 442 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 RLN3Q8WXF3 142 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 EZH1Q92800 747 aaPredicted RBP12.62□□□□□ -0.39
SDCBP-211ENST00000523441 CD101Q93033 1021 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 SENP8Q96LD8 212 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 GTPBP2Q9BX10 602 aaKnown RBP12.62□□□□□ -0.39
SDCBP-211ENST00000523441 SLC32A1Q9H598 525 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 TMEM134Q9H6X4 195 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 LRWD1Q9UFC0 647 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 WNT6Q9Y6F9 365 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 CEP192Q8TEP8 1941 aa12.62□□□□□ -0.39
SDCBP-211ENST00000523441 DMXL2Q8TDJ6 3036 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 PP2D1A8MPX8 630 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 LACTBL1A8MY62 500 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 CLDN3O15551 220 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 CSRP1P21291 193 aaKnown RBP12.61□□□□□ -0.39
SDCBP-211ENST00000523441 GPR15P49685 360 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 AMPD2Q01433 879 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 PMS2CLQ68D20 193 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 SYT13Q7L8C5 426 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 TMEFF1Q8IYR6 380 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 CHCHD4Q8N4Q1 142 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 CPA6Q8N4T0 437 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 PLIN2Q99541 437 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 TM6SF1Q9BZW5 370 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 HAPLN2Q9GZV7 340 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 TDP1Q9NUW8 608 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 ARHGAP28Q9P2N2 729 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 UBQLN1Q9UMX0 589 aaKnown RBP12.61□□□□□ -0.39
SDCBP-211ENST00000523441 SCN1AP35498 2009 aa12.61□□□□□ -0.39
SDCBP-211ENST00000523441 CFIP05156 583 aa12.6□□□□□ -0.39
SDCBP-211ENST00000523441 CDC25AP30304 524 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms