RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710	ORC1	Q13415	861 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	MAMLD1	Q13495	774 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	SOWAHA	Q2M3V2	549 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	MSANTD4	Q8NCY6	345 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	GSTCD	Q8NEC7	633 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	GAD1	Q99259	594 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	ADAM2	Q99965	735 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	CARD9	Q9H257	536 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	LCMT1	Q9UIC8	334 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710	STRIP2	Q9ULQ0	834 aa		21.34	■■□□□ 1.01
TRIO-223	ENST00000515710		O00370	1275 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	MICAL2	O94851	1124 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	TUBB	P07437	444 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	CTNNA2	P26232	953 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	SLC1A1	P43005	524 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	TRAF7	Q6Q0C0	670 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	LIMS2	Q7Z4I7	341 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	FEZF2	Q8TBJ5	459 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	BTBD6	Q96KE9	485 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	GOLGA2P5	Q9HBQ8	144 aa		21.33	■■□□□ 1.01
TRIO-223	ENST00000515710	ARL5C	A6NH57	179 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	MEIS3P2	A8K0S8	358 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	TAP1	Q03518	808 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	CLUL1	Q15846	466 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	C2CD6	Q53TS8	623 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	LCLAT1	Q6UWP7	414 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	CD101	Q93033	1021 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	LPP	Q93052	612 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	TSPYL2	Q9H2G4	693 aa	Predicted RBP	21.33	■■□□□ 1
TRIO-223	ENST00000515710	EHD2	Q9NZN4	543 aa		21.33	■■□□□ 1
TRIO-223	ENST00000515710	TTC7A	Q9ULT0	858 aa	Predicted RBP	21.33	■■□□□ 1
TRIO-223	ENST00000515710	CCDC66	A2RUB6	948 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	SPTLC1	O15269	473 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	SPOP	O43791	374 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	LILRA4	P59901	499 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	C2orf54	Q08AI8	447 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	CCDC70	Q6NSX1	233 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	PHLDB2	Q86SQ0	1253 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	TOP6BL	Q8N6T0	577 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	APPL2	Q8NEU8	664 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	OR6B3	Q8NGW1	331 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	21.32	■■□□□ 1	3e-7	■□□□□ 11.3
TRIO-223	ENST00000515710	PARD6B	Q9BYG5	372 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	ANKZF1	Q9H8Y5	726 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	RSAD1	Q9HA92	442 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	ARGLU1	Q9NWB6	273 aa	Predicted RBP	21.32	■■□□□ 1
TRIO-223	ENST00000515710	MIOS	Q9NXC5	875 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710	WDR35	Q9P2L0	1181 aa		21.32	■■□□□ 1
TRIO-223	ENST00000515710		A8MXQ7	604 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	HUS1	O60921	280 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	H2AFX	P16104	143 aa	Predicted RBP	21.31	■■□□□ 1
TRIO-223	ENST00000515710	RPL9	P32969	192 aa	Known RBP	21.31	■■□□□ 1
TRIO-223	ENST00000515710	EPC1	Q9H2F5	836 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	SNX25	Q9H3E2	840 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	SMARCAL1	Q9NZC9	954 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	PCDHA3	Q9Y5H8	950 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	TCRBV5S1A1T	A0A578	114 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710		M0QYV0	167 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	PGRMC1	O00264	195 aa	Known RBP	21.31	■■□□□ 1
TRIO-223	ENST00000515710	PROSC	O94903	275 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	CTNNA1	P35221	906 aa	Known RBP	21.31	■■□□□ 1
TRIO-223	ENST00000515710	GPD2	P43304	727 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	GSC	P56915	257 aa	Predicted RBP	21.31	■■□□□ 1
TRIO-223	ENST00000515710	LLGL2	Q6P1M3	1020 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	DNAJC24	Q6P3W2	148 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	RGS18	Q9NS28	235 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	OGDHL	Q9ULD0	1010 aa		21.31	■■□□□ 1
TRIO-223	ENST00000515710	SCN1A	P35498	2009 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	RHOXF2B	P0C7M4	288 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	GNL1	P36915	607 aa	Predicted RBP	21.3	■■□□□ 1
TRIO-223	ENST00000515710	PEX5	P50542	639 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	BFSP2	Q13515	415 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	FAM43B	Q6ZT52	329 aa	Predicted RBP	21.3	■■□□□ 1
TRIO-223	ENST00000515710	ACOT1	Q86TX2	421 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	ECHDC2	Q86YB7	292 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	CRYBG2	Q8N1P7	616 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	C3orf20	Q8ND61	904 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	KBTBD7	Q8WVZ9	684 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	C18orf8	Q96DM3	657 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	DEFB118	Q96PH6	123 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	RHOXF2	Q9BQY4	288 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	IP6K2	Q9UHH9	426 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	TSPAN16	Q9UKR8	245 aa		21.3	■■□□□ 1
TRIO-223	ENST00000515710	TARSL2	A2RTX5	802 aa	Known RBP	21.29	■■□□□ 1
TRIO-223	ENST00000515710	CCL5	P13501	91 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	SELP	P16109	830 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	WARS	P23381	471 aa	Known RBP	21.29	■■□□□ 1
TRIO-223	ENST00000515710	MAN1A1	P33908	653 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	GABRB2	P47870	512 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	SCNN1G	P51170	649 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	ZNF268	Q14587	947 aa	Predicted RBP	21.29	■■□□□ 1
TRIO-223	ENST00000515710	PTPN20	Q4JDL3	420 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	ARHGAP17	Q68EM7	881 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	FAM126B	Q8IXS8	530 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	21.29	■■□□□ 1
TRIO-223	ENST00000515710	NAP1L3	Q99457	506 aa	Predicted RBP	21.29	■■□□□ 1
TRIO-223	ENST00000515710	MIS12	Q9H081	205 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	WBP1L	Q9NX94	342 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	CYTH4	Q9UIA0	394 aa		21.29	■■□□□ 1
TRIO-223	ENST00000515710	TMEM59L	Q9UK28	342 aa		21.29	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms