RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZNF334Q9HCZ1 680 aaPredicted RBP12.35□□□□□ -0.43
VCAN-212ENST00000515397 DMAC2Q9NW81 257 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 GDAP2Q9NXN4 497 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 GTF3C4Q9UKN8 822 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 HCN4Q9Y3Q4 1203 aa12.35□□□□□ -0.43
VCAN-212ENST00000515397 A0A1W2PRU2 124 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 MYBPHLA2RUH7 354 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 KRBA1A5PL33 1030 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 LRRIQ3A6PVS8 624 aaPredicted RBP12.34□□□□□ -0.43
VCAN-212ENST00000515397 PHACTR2O75167 634 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 CLSTN1O94985 981 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 POU2F2P09086 479 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 PAX3P23760 479 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 CYP2F1P24903 491 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 AVPR2P30518 371 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 VIPR2P41587 438 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 PSMC1P62191 440 aaKnown RBP12.34□□□□□ -0.43
VCAN-212ENST00000515397 SNRPFP62306 86 aaKnown RBP12.34□□□□□ -0.43
VCAN-212ENST00000515397 MYO1EQ12965 1108 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 DDR2Q16832 855 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 FAM78AQ5JUQ0 283 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 C12orf56Q8IXR9 622 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 SHKBP1Q8TBC3 707 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 PARD3BQ8TEW8 1205 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 KBTBD7Q8WVZ9 684 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 MRPL45Q9BRJ2 306 aaKnown RBP12.34□□□□□ -0.43
VCAN-212ENST00000515397 LRRC3Q9BY71 257 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 OXCT2Q9BYC2 517 aaPredicted RBP12.34□□□□□ -0.43
VCAN-212ENST00000515397 MFSD1Q9H3U5 465 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 ASAH2Q9NR71 780 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 NXF1Q9UBU9 619 aaKnown RBP12.34□□□□□ -0.43
VCAN-212ENST00000515397 DUSP12Q9UNI6 340 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 NME7Q9Y5B8 376 aa12.34□□□□□ -0.43
VCAN-212ENST00000515397 PDXKO00764 312 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 CALUO43852 315 aaPredicted RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 PRPF40AO75400 957 aaKnown RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 MYL1P05976 194 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 HAPLN1P10915 354 aaPredicted RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 NPR3P17342 541 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 ATF6P18850 670 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 CDH8P55286 799 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 TSPY1Q01534 308 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 BIRC3Q13489 604 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 TRPC3Q13507 836 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 GRM2Q14416 872 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 WDR72Q3MJ13 1102 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 TDRD10Q5VZ19 366 aaKnown RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 GAREM2Q75VX8 874 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 TMC8Q8IU68 726 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 DCP1BQ8IZD4 617 aaKnown RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 GOLGA5Q8TBA6 731 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 CCDC47Q96A33 483 aaKnown RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 SLITRK6Q9H5Y7 841 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 MMRN2Q9H8L6 949 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 CGNQ9P2M7 1197 aaKnown RBP12.33□□□□□ -0.44
VCAN-212ENST00000515397 MAFFQ9ULX9 164 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 PCDHA5Q9Y5H7 936 aa12.33□□□□□ -0.44
VCAN-212ENST00000515397 ZNF318Q5VUA4 2279 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 WDFY4Q6ZS81 3184 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 ZNF197O14709 1029 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 GABRDO14764 452 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 LRRN2O75325 713 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 AKAP3O75969 853 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 VNN1O95497 513 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 C4BPAP04003 597 aaKnown RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 TRIM49P0CI25 452 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 TRIM49CP0CI26 452 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 SRFP11831 508 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 CD72P21854 359 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 GABRR2P28476 465 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 GNL1P36915 607 aaPredicted RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 RAP1GAPP47736 663 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 TUFMP49411 452 aaKnown RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 CYP4F8P98187 520 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 MYL7Q01449 175 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 FAM160A1Q05DH4 1040 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 PLD1Q13393 1074 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 KCNB1Q14721 858 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 INTS6LQ5JSJ4 861 aaKnown RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 C1orf220Q5T0J3 134 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 SCARA5Q6ZMJ2 495 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 SLC9A9Q8IVB4 645 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 SCN4BQ8IWT1 228 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 TMEM86AQ8N2M4 240 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 TOP6BLQ8N6T0 577 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 TMEM105Q8N8V8 129 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 PRSS33Q8NF86 280 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 OR6B3Q8NGW1 331 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 ZSCAN18Q8TBC5 510 aaPredicted RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 PKMYT1Q99640 499 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 ACBD6Q9BR61 282 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 SMG9Q9H0W8 520 aaKnown RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 ATXN3LQ9H3M9 355 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 AVENQ9NQS1 362 aaPredicted RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 GDE1Q9NZC3 331 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 MAGED2Q9UNF1 606 aaPredicted RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 PCDHB5Q9Y5E4 795 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 ZFP37Q9Y6Q3 630 aaPredicted RBP12.32□□□□□ -0.44
VCAN-212ENST00000515397 NCANO14594 1321 aa12.32□□□□□ -0.44
VCAN-212ENST00000515397 FCARP24071 287 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms