RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PCSK1P29120 753 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 ARPP19P56211 112 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 NR1I3Q14994 352 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 TCEAL5Q5H9L2 206 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 MICALL1Q8N3F8 863 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 KREMEN1Q96MU8 473 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 TLE6Q9H808 572 aa31.63■■■□□ 2.65
LIMCH1-211ENST00000509638 A8MXQ7 604 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 PDGFRBP09619 1106 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 FOSL2P15408 326 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 NRIP1P48552 1158 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 NDST1P52848 882 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 PSMC1P62191 440 aaKnown RBP31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 PLCB2Q00722 1185 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 ROR1Q01973 937 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 SYT15Q9BQS2 421 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 ACBD6Q9BR61 282 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 XPO4Q9C0E2 1151 aaKnown RBP31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 PLCB1Q9NQ66 1216 aa31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 AJAP1Q9UKB5 411 aaPredicted RBP31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 BARX2Q9UMQ3 279 aaPredicted RBP31.62■■■□□ 2.65
LIMCH1-211ENST00000509638 KLRC2P26717 231 aa31.61■■■□□ 2.65
LIMCH1-211ENST00000509638 TSPY1Q01534 308 aa31.61■■■□□ 2.65
LIMCH1-211ENST00000509638 ORC1Q13415 861 aa31.61■■■□□ 2.65
LIMCH1-211ENST00000509638 KLHDC7AQ5VTJ3 777 aa31.61■■■□□ 2.65
LIMCH1-211ENST00000509638 DPEP3Q9H4B8 488 aa31.61■■■□□ 2.65
LIMCH1-211ENST00000509638 PRUNE2Q8WUY3 3088 aa31.61■■■□□ 2.65
LIMCH1-211ENST00000509638 CILPO75339 1184 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 YWHAEP62258 255 aaKnown RBP31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 INTS6LQ5JSJ4 861 aaKnown RBP31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 UBR7Q8N806 425 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 ZCWPW1Q9H0M4 648 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 GANQ9H2C0 597 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 FAM124BQ9H5Z6 455 aaPredicted RBP31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 FHOD1Q9Y613 1164 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 WDR27A2RRH5 827 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 CLASP2O75122 1294 aaKnown RBP31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 TPM3P06753 285 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 MFAP3P55082 362 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 DUSP6Q16828 381 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 CCDC142Q17RM4 750 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 ENOSF1Q7L5Y1 443 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 PALB2Q86YC2 1186 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 TTC39CQ8N584 583 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 FAM81BQ96LP2 452 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 TWNKQ96RR1 684 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 CDH9Q9ULB4 789 aa31.6■■■□□ 2.65
LIMCH1-211ENST00000509638 A0A1W2PQC6 194 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 EPHB6O15197 1021 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 CBFA2T2O43439 604 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 UCHL3P15374 230 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 RFX1P22670 979 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 GTF2F1P35269 517 aaKnown RBP eCLIP31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 RAB33AQ14088 237 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 SLC39A12Q504Y0 691 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 IQCEQ6IPM2 695 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 SARM1Q6SZW1 724 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 UNC93AQ86WB7 457 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 DNAJC12Q9UKB3 198 aa31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 MTCL1Q9Y4B5 1905 aaKnown RBP31.59■■■□□ 2.65
LIMCH1-211ENST00000509638 XIRP2A4UGR9 3374 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 PTPRDP23468 1912 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 ATP2C2O75185 946 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 NOL4O94818 638 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 ACO1P21399 889 aaKnown RBP31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 CLCN4P51793 760 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 HYAL1Q12794 435 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 ARHGAP44Q17R89 818 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 ZNF394Q53GI3 561 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 NEK11Q8NG66 645 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 WHAMMQ8TF30 809 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 CDCA3Q99618 268 aaPredicted RBP31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 NT5C1AQ9BXI3 368 aa31.58■■■□□ 2.65
LIMCH1-211ENST00000509638 AP5Z1O43299 807 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 GLUD1P00367 558 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 CDR1P51861 262 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 RAPGEF1Q13905 1077 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 B3GALNT2Q8NCR0 500 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 JAKMIP2Q96AA8 810 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 TNIP3Q96KP6 325 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 PKMYT1Q99640 499 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 CRTAC1Q9NQ79 661 aa31.57■■■□□ 2.64
LIMCH1-211ENST00000509638 TGM5O43548 720 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 ACOT1Q86TX2 421 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 LRRTM3Q86VH5 581 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 PPFIBP1Q86W92 1011 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 DCP1BQ8IZD4 617 aaKnown RBP31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 PGLYRP2Q96PD5 576 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 ELOVL4Q9GZR5 314 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 IGFLR1Q9H665 355 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 GTF3C4Q9UKN8 822 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 PCDHB4Q9Y5E5 795 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 HCFC2Q9Y5Z7 792 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 BRWD1Q9NSI6 2320 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 PBX1P40424 430 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 GPR17Q13304 367 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 LLGL2Q6P1M3 1020 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 TMEM270Q6UE05 265 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 RNF19BQ6ZMZ0 732 aa31.56■■■□□ 2.64
LIMCH1-211ENST00000509638 NAA15Q9BXJ9 866 aaKnown RBP31.56■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms