RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TISP43B9A030 160 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 EEFSECP57772 596 aaKnown RBP3.85□□□□□ -1.79
NUP54-208ENST00000508604 GTF2H3Q13889 308 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 RBM20Q5T481 1227 aaKnown RBP3.85□□□□□ -1.79
NUP54-208ENST00000508604 MIS18BP1Q6P0N0 1132 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 KRT73Q86Y46 540 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 KLHDC4Q8TBB5 520 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 WDR66Q8TBY9 1149 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 CFAP97Q9P2B7 532 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 ZNF580Q9UK33 172 aa3.85□□□□□ -1.79
NUP54-208ENST00000508604 MYO1FO00160 1098 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 CYP2C19P33261 490 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 KRTAP10-6P60371 365 aaPredicted RBP3.84□□□□□ -1.79
NUP54-208ENST00000508604 RABEP1Q15276 862 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 PCID2Q5JVF3 399 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 CATSPERGQ6ZRH7 1159 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 GALNT16Q8N428 558 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 AFAP1L2Q8N4X5 818 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 PNLDC1Q8NA58 520 aaKnown RBP3.84□□□□□ -1.79
NUP54-208ENST00000508604 PSD4Q8NDX1 1056 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 REPS1Q96D71 796 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 NELL2Q99435 816 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 SPRTNQ9H040 489 aaPredicted RBP3.84□□□□□ -1.79
NUP54-208ENST00000508604 RLIMQ9NVW2 624 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 SIDT1Q9NXL6 827 aaKnown RBP3.84□□□□□ -1.79
NUP54-208ENST00000508604 RAD54BQ9Y620 910 aa3.84□□□□□ -1.79
NUP54-208ENST00000508604 ZNF785A8K8V0 405 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 E9PLN8 166 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 TLR5O60602 858 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 CYP2C18P33260 490 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 PSMC1P62191 440 aaKnown RBP3.84□□□□□ -1.8
NUP54-208ENST00000508604 TLE1Q04724 770 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 CCDC93Q567U6 631 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 RNF219Q5W0B1 726 aaPredicted RBP3.84□□□□□ -1.8
NUP54-208ENST00000508604 TAF2Q6P1X5 1199 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 MRPL10Q7Z7H8 261 aaKnown RBP3.84□□□□□ -1.8
NUP54-208ENST00000508604 ZDHHC17Q8IUH5 632 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 SAMD14Q8IZD0 417 aaPredicted RBP3.84□□□□□ -1.8
NUP54-208ENST00000508604 VKORC1Q9BQB6 163 aa3.84□□□□□ -1.8
NUP54-208ENST00000508604 CYP2D7A0A087X1C5 515 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 SMIM35A0A1B0GVV1 85 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 SOCS2O14508 198 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 GPR39O43194 453 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 NDUFS2O75306 463 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 JUPP14923 745 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 SCP2P22307 547 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 SMARCA1P28370 1054 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 CNGA1P29973 690 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 ARHGAP25P42331 645 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 HOXA4Q00056 320 aaPredicted RBP3.83□□□□□ -1.8
NUP54-208ENST00000508604 KLF1Q13351 362 aaPredicted RBP3.83□□□□□ -1.8
NUP54-208ENST00000508604 SFRP4Q6FHJ7 346 aaPredicted RBP3.83□□□□□ -1.8
NUP54-208ENST00000508604 NSMCE1Q8WV22 266 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 MRGPRX4Q96LA9 322 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 ASB2Q96Q27 587 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 SMOC2Q9H3U7 446 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 EBF3Q9H4W6 596 aa3.83□□□□□ -1.8
NUP54-208ENST00000508604 TRIM75PA6NK02 468 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 H0YIZ8 118 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 SLC16A3O15427 465 aaKnown RBP3.82□□□□□ -1.8
NUP54-208ENST00000508604 GJB1P08034 283 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 NHLRC4P0CG21 123 aaPredicted RBP3.82□□□□□ -1.8
NUP54-208ENST00000508604 LPOP22079 712 aaPredicted RBP3.82□□□□□ -1.8
NUP54-208ENST00000508604 ZNF135P52742 658 aaPredicted RBP3.82□□□□□ -1.8
NUP54-208ENST00000508604 ERVK-21P61565 698 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 ACAP2Q15057 778 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 CERKLQ49MI3 558 aaPredicted RBP3.82□□□□□ -1.8
NUP54-208ENST00000508604 NANOGP1Q8N7R0 232 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 C5orf34Q96MH7 638 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 TRNAU1APQ9NX07 287 aaKnown RBP3.82□□□□□ -1.8
NUP54-208ENST00000508604 ETAA1Q9NY74 926 aa3.82□□□□□ -1.8
NUP54-208ENST00000508604 IGKV2D-30A0A075B6S6 120 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 ZNF213O14771 459 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 PPM1DO15297 605 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 VPS4BO75351 444 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 CCKARP32238 428 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 PDE1AP54750 535 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 IL10RAQ13651 578 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 HABP2Q14520 560 aaPredicted RBP3.81□□□□□ -1.8
NUP54-208ENST00000508604 LRRC41Q15345 812 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 PGM2L1Q6PCE3 622 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 TTC7BQ86TV6 843 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 DTX2Q86UW9 622 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 LRRC71Q8N4P6 559 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 COG1Q8WTW3 980 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 SLAMF7Q9NQ25 335 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 MKS1Q9NXB0 559 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 DLL3Q9NYJ7 618 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 CCNL1Q9UK58 526 aaPredicted RBP3.81□□□□□ -1.8
NUP54-208ENST00000508604 SH2B3Q9UQQ2 575 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 WDR17Q8IZU2 1322 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 K7ESF4 209 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 EYA4O95677 639 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 GNAI2P04899 355 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 NPSP0C0P6 89 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 CHRM3P20309 590 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 PCSK6P29122 969 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 DAZAP2Q15038 168 aaPredicted RBP3.81□□□□□ -1.8
NUP54-208ENST00000508604 MIDNQ504T8 468 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms