RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TRIM65Q6PJ69 517 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 KIFC1Q9BW19 673 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 C2CD2Q9Y426 696 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 TEX28O15482 410 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 HUS1O60921 280 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ATP4AP20648 1035 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 HSD17B3P37058 310 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CASP4P49662 377 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GMFBP60983 142 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CNTN1Q12860 1018 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ZYXQ15942 572 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF699Q32M78 642 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF57Q68EA5 555 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 TSHZ1Q6ZSZ6 1077 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CHMP1BQ7LBR1 199 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PTPRN2Q92932 1015 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 RFT1Q96AA3 541 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 SH3KBP1Q96B97 665 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 TEX13BQ9BXU2 312 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 SP110Q9HB58 689 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 HBS1LQ9Y450 684 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 EDC4Q6P2E9 1401 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PNMA6FA0A0J9YX94 578 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PSMB9P28065 219 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ALDH1B1P30837 517 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 MDH1BQ5I0G3 518 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PEG10Q86TG7 708 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CMTR1Q8N1G2 835 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GIMAP8Q8ND71 665 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ASIC4Q96FT7 647 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 BTBD10Q9BSF8 475 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 BHMT2Q9H2M3 363 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 RSAD1Q9HA92 442 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PLEKHA5Q9HAU0 1116 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 HAO1Q9UJM8 370 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 MYO3BQ8WXR4 1341 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 HEATR9A2RTY3 570 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GSAPA4D1B5 854 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 EFCAB10A6NFE3 127 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 QARSP47897 775 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 FOXD4Q12950 439 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GTF2H3Q13889 308 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 EDRF1Q3B7T1 1238 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 SPDYAQ5MJ70 313 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 THOC7Q6I9Y2 204 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 C3orf62Q6ZUJ4 267 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CENPLQ8N0S6 344 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 SPICE1Q8N0Z3 855 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 DHRSXQ8N5I4 330 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 MSL3Q8N5Y2 521 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 HAVCR1Q96D42 359 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF594Q96JF6 807 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 GANQ9H2C0 597 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 PCMTD2Q9NV79 361 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 CIDEBQ9UHD4 219 aa11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 FNDC3AQ9Y2H6 1198 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-208ENST00000508501 LOC100653049A0A140TA62 436 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 RAD51CO43502 376 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 TIMM44O43615 452 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 KRT34O76011 436 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 HOXC9P31274 260 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 QPRTQ15274 297 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 UGT3A1Q6NUS8 523 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 MARK2Q7KZI7 788 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF677Q86XU0 584 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 EIF1ADQ8N9N8 165 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 KYQ8NBH2 561 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 OR6B3Q8NGW1 331 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 LENG1Q96BZ8 264 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 SLITRK2Q9H156 845 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 WHRNQ9P202 907 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 FRMPD2Q68DX3 1309 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 SNRPFP62306 86 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 DNAJC3Q13217 504 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 AGAP9Q5VTM2 703 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 TMEM270Q6UE05 265 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 LINC00523Q86TU6 105 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 UBASH3BQ8TF42 649 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 DCUN1D1Q96GG9 259 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 NUAK2Q9H093 628 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 C8orf4Q9NR00 106 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 TMEM51Q9NW97 253 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 XPO7Q9UIA9 1087 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 GNB5O14775 395 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 POTEIP0CG38 1075 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 PGBD4Q96DM1 585 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 SENP7Q9BQF6 1050 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 SLC52A2Q9HAB3 445 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 ALG13Q9NP73 1137 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 CYLDQ9NQC7 956 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 RBM12Q9NTZ6 932 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 AKT3Q9Y243 479 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 CSADQ9Y600 493 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 FHOD1Q9Y613 1164 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 KIAA0586Q9BVV6 1533 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 LDLRP01130 860 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 EIF4A1P60842 406 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 ABCB5Q2M3G0 1257 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms