RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ACTN3Q08043 901 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 ART3Q13508 389 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 ANKRD20A4Q4UJ75 823 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 ANKRD20A8PQ5CZ79 823 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 ANKRD20A2Q5SQ80 823 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 ANKRD20A1Q5TYW2 823 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 SPOCD1Q6ZMY3 1216 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 IRF2BP2Q7Z5L9 587 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 MAGEB18Q96M61 343 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 DCLK3Q9C098 648 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 CHMP2BQ9UQN3 213 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 IQCA1LA6NCM1 817 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 TGFB3P10600 412 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 VDRP11473 427 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 SOX10P56693 466 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 BOLA3Q53S33 107 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 LRFN2Q9ULH4 789 aa11.29□□□□□ -0.6
LIMCH1-205ENST00000503057 COL1A1P02452 1464 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 USP54Q70EL1 1684 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 PYGMP11217 842 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 SV2CQ496J9 727 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 GPRC5AQ8NFJ5 357 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 UBA3Q8TBC4 463 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 PURBQ96QR8 312 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 DPP3Q9NY33 737 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 TYW5A2RUC4 315 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 RRN3P2A6NIE6 340 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 GOLGA8RI6L899 631 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 M0R2N6 131 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 ATICP31939 592 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 RPL21P46778 160 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 DLG4P78352 724 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 PPP3CAQ08209 521 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 ACAD11Q709F0 780 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 FAM71DQ8N9W8 422 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 KATNAL1Q9BW62 490 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 CISHQ9NSE2 258 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 PCDHAC2Q9Y5I4 1007 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 ANKRD63C9JTQ0 380 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 SCG3Q8WXD2 468 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 GGT7Q9UJ14 662 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 TYK2P29597 1187 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 C2CD6Q53TS8 623 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 LVRNQ6Q4G3 990 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 PID1Q7Z2X4 250 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 EPS8L1Q8TE68 723 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 EPAS1Q99814 870 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 SLC40A1Q9NP59 571 aa11.28□□□□□ -0.6
LIMCH1-205ENST00000503057 TTC4O95801 387 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 CYP1A2P05177 515 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 CYP2C8P10632 490 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 PNPLA4P41247 253 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 PAPOLAP51003 745 aaKnown RBP11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 TPI1P60174 286 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 DGKDQ16760 1214 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 NOTUMQ6P988 496 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 ZPBP2Q6X784 338 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 MROH8Q9H579 483 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 PLEKHA5Q9HAU0 1116 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 NPHS2Q9NP85 383 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 ZFATQ9P243 1243 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 ROBO1Q9Y6N7 1651 aa11.27□□□□□ -0.6
LIMCH1-205ENST00000503057 TGFB1I1O43294 461 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 SNRPAP09012 282 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 NLRP11P59045 1033 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 LAMTOR4Q0VGL1 99 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 PDK2Q15119 407 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 EFHC1Q5JVL4 640 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 KRT35Q92764 455 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 PGBD4Q96DM1 585 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 HES6Q96HZ4 224 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 EFHD1Q9BUP0 239 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 KDM4CQ9H3R0 1056 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 CYP3A43Q9HB55 503 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 TMEM150BA6NC51 233 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 F5H423 210 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 PSMD3O43242 534 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 NCKAP1LP55160 1127 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 MYL6P60660 151 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 TTMPQ5BVD1 217 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 MTHFD1LQ6UB35 978 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 APTXQ7Z2E3 356 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 ACSF2Q96CM8 615 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 PARK7Q99497 189 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 MTO1Q9Y2Z2 717 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 RARAP10276 462 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 HGSNATQ68CP4 663 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 FAM71AQ8IYT1 594 aa11.27□□□□□ -0.61
LIMCH1-205ENST00000503057 H0Y3Z8 333 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 O00370 1275 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 GRAP2O75791 330 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 ZCWPW2Q504Y3 356 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 C1orf146Q5VVC0 180 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 C12orf56Q8IXR9 622 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 PGM2Q96G03 612 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 CLMNQ96JQ2 1002 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 SEMA4AQ9H3S1 761 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 FAM49BQ9NUQ9 324 aa11.26□□□□□ -0.61
LIMCH1-205ENST00000503057 NFASCO94856 1347 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms