RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CFAP73A6NFT4 308 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 LRRIQ4A6NIV6 560 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DNALI1O14645 258 aaPredicted RBP16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 LDHAP00338 332 aaKnown RBP16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 OATP04181 439 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FOXN2P32314 431 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RDXP35241 583 aaKnown RBP16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 BNIP1Q12981 228 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NOL9Q5SY16 702 aaKnown RBP16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 KAZNQ674X7 775 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DRICH1Q6PGQ1 229 aaPredicted RBP16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 GSTA5Q7RTV2 222 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ERO1BQ86YB8 467 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DEPTORQ8TB45 409 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TGS1Q96RS0 853 aaKnown RBP16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NOD2Q9HC29 1040 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ANKFY1Q9P2R3 1169 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ARL2BPQ9Y2Y0 163 aa16.99■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SPDYE5A6NIY4 337 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CST3P01034 146 aaPredicted RBP16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ETS1P14921 441 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TAC1P20366 129 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 STX2P32856 288 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 WDR4P57081 412 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 OGDHQ02218 1023 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ADCY1Q08828 1119 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NCOA4Q13772 614 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TXNRD3NBQ6F5E7 133 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CCDC77Q9BR77 488 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZNF302Q9NR11 478 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SH3BP1Q9Y3L3 701 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 IVNS1ABPQ9Y6Y0 642 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TTLL13PA6NNM8 815 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 STAM2O75886 525 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 KCNJ2P63252 427 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 LMNB2Q03252 620 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MGAT5Q09328 741 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FSTL1Q12841 308 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZKSCAN8Q15776 578 aaPredicted RBP16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PPP1R2P3Q6NXS1 205 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ARHGEF18Q6ZSZ5 1173 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FITM2Q8N6M3 262 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ALLCQ8N6M5 410 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TCP11Q8WWU5 503 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RBM41Q96IZ5 413 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ECT2Q9H8V3 914 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SAYSD1Q9NPB0 183 aa16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MKI67P46013 3256 aaKnown RBP16.98■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 F8VP50 259 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NQO1P15559 274 aaKnown RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RIPK1Q13546 671 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TMED2Q15363 201 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 GNPTABQ3T906 1256 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 SPOCD1Q6ZMY3 1216 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RIBC1Q8N443 379 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 C12orf42Q96LP6 360 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RMDN2Q96LZ7 410 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PLCD4Q9BRC7 762 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NIFKQ9BYG3 293 aaKnown RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ACAD9Q9H845 621 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MCM8Q9UJA3 840 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PNMA3Q9UL41 463 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TMEM88BA6NKF7 163 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RASA4BC9J798 803 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ATP2A1O14983 1001 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RASA4O43374 803 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 KRT1P04264 644 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CYP2C8P10632 490 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZNF268Q14587 947 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FASTKD3Q14CZ7 662 aaKnown RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MTFR1Q15390 333 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PPP1R15BQ5SWA1 713 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 FAM43BQ6ZT52 329 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TRABD2AQ86V40 505 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CEP57Q86XR8 500 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ANKLE1Q8NAG6 615 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TMEM134Q9H6X4 195 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 AS3MTQ9HBK9 375 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 NKIRAS1Q9NYS0 192 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ZNF148Q9UQR1 794 aa16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DRG1Q9Y295 367 aaKnown RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.97■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 LOC285556D6RIA3 1793 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 GSTTP1A0A1W2PQM5 241 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 AOC2O75106 756 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TJP3O95049 919 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ASS1P00966 412 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PECAM1P16284 738 aaPredicted RBP16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ATF7P17544 494 aaPredicted RBP16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ICAM3P32942 547 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TNFSF9P41273 254 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ARSEP51690 589 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 COPS2P61201 443 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 MCL1Q07820 350 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CAPSQ13938 189 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 OASLQ15646 514 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 WDR72Q3MJ13 1102 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 LRRC38Q5VT99 294 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 PPP1R21Q6ZMI0 780 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 ANKRD35Q8N283 1001 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms