RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 MON1BQ7L1V2 547 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 PHLDB2Q86SQ0 1253 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ZBED8Q8IZ13 594 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 RCOR2Q8IZ40 523 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 FBXL13Q8NEE6 735 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 LZICQ8WZA0 190 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 NKD2Q969F2 451 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 FNBP1Q96RU3 617 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 UBE2OQ9C0C9 1292 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 C1orf21Q9H246 121 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 PCIF1Q9H4Z3 704 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 ARHGEF4Q9NR80 690 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 KCNQ5Q9NR82 932 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 CHCHD3Q9NX63 227 aaKnown RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 NDE1Q9NXR1 346 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 KCNK4Q9NYG8 393 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 WRAP73Q9P2S5 460 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-230ENST00000495090 WASF2Q9Y6W5 498 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 STRCQ7RTU9 1775 aa10.19□□□□□ -0.78
SYNE1-230ENST00000495090 SMIM31A0A1B0GVY4 71 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 FCHO1O14526 889 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 PYGLP06737 847 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 ITGAVP06756 1048 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 ADRB2P07550 413 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 EEF2P13639 858 aaKnown RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 ETV4P43268 484 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 NEK3P51956 506 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 RTP1P59025 263 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 GPX6P59796 221 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 OVGP1Q12889 678 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 PDIA2Q13087 525 aaKnown RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 GPS1Q13098 491 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 GRM2Q14416 872 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 HIF1AQ16665 826 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 CERKLQ49MI3 558 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 LRRC38Q5VT99 294 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 CCDC174Q6PII3 467 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 USP37Q86T82 979 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 SCUBE1Q8IWY4 988 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 PIP4K2CQ8TBX8 421 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 GPR101Q96P66 508 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 TUBGCP5Q96RT8 1024 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 PAFAH2Q99487 392 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 LXNQ9BS40 222 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 FHDC1Q9C0D6 1143 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 FBXO6Q9NRD1 293 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 RAB20Q9NX57 234 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 DNPEPQ9ULA0 475 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 PLA2G4CQ9UP65 541 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 FARP1Q9Y4F1 1045 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-230ENST00000495090 PCDHB2Q9Y5E7 798 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 GMEB1Q9Y692 573 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 SCINQ9Y6U3 715 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 CLUHO75153 1309 aa10.18□□□□□ -0.78
SYNE1-230ENST00000495090 E7ESA3 106 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 CHMP2AO43633 222 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 ATP9BO43861 1147 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 UBTFL6P0CB48 400 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 IMPDH2P12268 514 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 AMPD1P23109 780 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 NSFP46459 744 aaKnown RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 CLCN2P51788 898 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 VCPP55072 806 aaKnown RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 TAS2R40P59535 323 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 MAP3K10Q02779 954 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SLC18A2Q05940 514 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 CDC16Q13042 620 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 OASLQ15646 514 aaKnown RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 CIAPIN1Q6FI81 312 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 PADI6Q6TGC4 694 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 DCAKDQ8WVC6 231 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 APOPT1Q96IL0 206 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 FAM161BQ96MY7 647 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 EHMT1Q9H9B1 1298 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 CNTN3Q9P232 1028 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 STRIP2Q9ULQ0 834 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 ZNF148Q9UQR1 794 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 BCS1LQ9Y276 419 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 DENND3A2RUS2 1198 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 AP1G1O43747 822 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 GLRA2P23416 452 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 RANBP1P43487 201 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 ARL4CP56559 192 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 ITGA9Q13797 1035 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SNRNP35Q16560 246 aaKnown RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 AOC3Q16853 763 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 USH1GQ495M9 461 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SH2D4BQ5SQS7 431 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 PLEKHA7Q6IQ23 1121 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 RIPOR1Q6ZS17 1223 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 LRRC6Q86X45 466 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 TRIM42Q8IWZ5 723 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 RBM12BQ8IXT5 1001 aaKnown RBP10.17□□□□□ -0.78
SYNE1-230ENST00000495090 KLHL23Q8NBE8 558 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 GLIS1Q8NBF1 620 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 C7orf26Q96N11 449 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 SLITRK1Q96PX8 696 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 RIT2Q99578 217 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 TEKT3Q9BXF9 490 aa10.17□□□□□ -0.78
SYNE1-230ENST00000495090 FRMD8P1Q9BZ68 369 aaPredicted RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms