RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 TJP2Q9UDY2 1190 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 CEP83Q9Y592 693 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 IGKV6-21A0A0C4DH24 114 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 TCRBV5S1A1TA0A578 114 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 DNM1LO00429 736 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 ACKR2O00590 384 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 ARSEP51690 589 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 LMNB2Q03252 620 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 HIBCHQ6NVY1 386 aaPredicted RBP11.84□□□□□ -0.51
CHMP3-209ENST00000494623 TSHZ1Q6ZSZ6 1077 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 PLPPR4Q7Z2D5 763 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 CCDC13Q8IYE1 715 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 FGD4Q96M96 766 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 RBM15Q96T37 977 aaKnown RBP eCLIP11.84□□□□□ -0.51
CHMP3-209ENST00000494623 XYLT2Q9H1B5 865 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 MINDY3Q9H8M7 445 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 PDGFCQ9NRA1 345 aa11.84□□□□□ -0.51
CHMP3-209ENST00000494623 LGR5O75473 907 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 CXCL8P10145 99 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 TXNP10599 105 aaKnown RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 CETPP11597 493 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 EIF4BP23588 611 aaKnown RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 ATP5DP30049 168 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 HNRNPH1P31943 449 aaKnown RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 RFC1P35251 1148 aaPredicted RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 MAGEA4P43358 317 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PSMC4P43686 418 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 IREB2P48200 963 aaKnown RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 DYNLT1P63172 113 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 GPS1Q13098 491 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 TTLL12Q14166 644 aaPredicted RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PIGHQ14442 188 aaPredicted RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 KCTD2Q14681 263 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 WDR72Q3MJ13 1102 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 MMP19Q99542 508 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 ZNF518BQ9C0D4 1074 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 ZWILCHQ9H900 591 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PTPRHQ9HD43 1115 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 SAYSD1Q9NPB0 183 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 RBPJLQ9UBG7 517 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 NAALADL1Q9UQQ1 740 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 A0A0G2JLL6 359 aaPredicted RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 ASAP2O43150 1006 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 BRAFP15056 766 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PSMA2P25787 234 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 TFDP1Q14186 410 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 SMTNL2Q2TAL5 461 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 KCNT1Q5JUK3 1230 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PPP1R15BQ5SWA1 713 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 VSTM1Q6UX27 236 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PRRT2Q7Z6L0 340 aaPredicted RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 EXOC8Q8IYI6 725 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 ANKS4BQ8N8V4 417 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 CCDC77Q9BR77 488 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 FZD8Q9H461 694 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 RPF1Q9H9Y2 349 aaKnown RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 SAMD15Q9P1V8 674 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 SAE1Q9UBE0 346 aaPredicted RBP11.83□□□□□ -0.52
CHMP3-209ENST00000494623 PPME1Q9Y570 386 aa11.83□□□□□ -0.52
CHMP3-209ENST00000494623 GAS2O43903 313 aaKnown RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 SLC25A27O95847 323 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 IFNB1P01574 187 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 IQCF3P0C7M6 154 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 KRT3P12035 628 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 PROZP22891 400 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 EAPPQ56P03 285 aaPredicted RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 ANKRD20A8PQ5CZ79 823 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 TFDP3Q5H9I0 405 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 LRRC38Q5VT99 294 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 KCNV1Q6PIU1 500 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 CAPN12Q6ZSI9 719 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 PIGWQ7Z7B1 504 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 JOSD2Q8TAC2 188 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 GDAP1Q8TB36 358 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 SGIP1Q9BQI5 828 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 TMEM121Q9BTD3 319 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 RNPEPQ9H4A4 650 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 SMARCAD1Q9H4L7 1026 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 C10orf88Q9H8K7 445 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 CYTH4Q9UIA0 394 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 PCDHGC3Q9UN70 934 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 hCG_1818297A0A087WSY0 165 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 TCP11X1B4DZS4 312 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 PSMC1P62191 440 aaKnown RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 YWHAEP62258 255 aaKnown RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 MPP2Q14168 576 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 PTPN20Q4JDL3 420 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 ZNF667Q5HYK9 610 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 DPH6Q7L8W6 267 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 SRRM1Q8IYB3 904 aaKnown RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 CNPY4Q8N129 248 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 ZCCHC9Q8N567 271 aaKnown RBP11.82□□□□□ -0.52
CHMP3-209ENST00000494623 ALLCQ8N6M5 410 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 CCT6BQ92526 530 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 CDT1Q9H211 546 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 CCDC134Q9H6E4 229 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 SYNCQ9H7C4 482 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 AGTPBP1Q9UPW5 1226 aa11.82□□□□□ -0.52
CHMP3-209ENST00000494623 SIP14410 1827 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms