RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ATP1A2P50993 1020 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 GNGT1P63211 74 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 KIZQ2M2Z5 673 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 LRRC38Q5VT99 294 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 NIPA2Q8N8Q9 360 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 GRK7Q8WTQ7 553 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 RNF25Q96BH1 459 aaPredicted RBP22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 ADAMTS10Q9H324 1103 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 CENPHQ9H3R5 247 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 HOMER3Q9NSC5 361 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 SLC5A4Q9NY91 659 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 WHRNQ9P202 907 aa22.33■■□□□ 1.16
CCDC88B-208ENST00000492980 NUDT17P0C025 328 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 GRM5P41594 1212 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 EIF3BP55884 814 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 PIGHQ14442 188 aaPredicted RBP22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 CCNG2Q16589 344 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 RCOR2Q8IZ40 523 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 TMEM176AQ96HP8 235 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 DPP3Q9NY33 737 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 TJP2Q9UDY2 1190 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 RALGAPA2Q2PPJ7 1873 aa22.32■■□□□ 1.16
CCDC88B-208ENST00000492980 A6NJR5 290 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 TP73O15350 636 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 DYNC1LI2O43237 492 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 P4HA1P13674 534 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 NFX1Q12986 1120 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 PRAMEF19Q5SWL8 479 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 MORN1Q5T089 497 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 AGBL2Q5U5Z8 902 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 NT5DC4Q86YG4 428 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 ATL2Q8NHH9 583 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 RBM41Q96IZ5 413 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 SLITRK1Q96PX8 696 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 LRRC4CQ9HCJ2 640 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 CALCOCO1Q9P1Z2 691 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 PI4K2BG5E9Z4 385 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 STAU1O95793 577 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 KRT1P04264 644 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 RBP5P82980 135 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 TMEM62Q0P6H9 643 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 CALCOCO2Q13137 446 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 DCAF4L1Q3SXM0 396 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 TTC19Q6DKK2 380 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 FAM49AQ9H0Q0 323 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 ASIC3Q9UHC3 531 aa22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 FEZ2Q9UHY8 353 aaPredicted RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 GNEQ9Y223 722 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-208ENST00000492980 GOLGA8SH3BPF8 625 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 EIF3HO15372 352 aaKnown RBP eCLIP22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 ECM2O94769 699 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 MICAL2O94851 1124 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 GAS8O95995 478 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 F2P00734 622 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 IVLP07476 585 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 SMIM10L2AP0DMW4 78 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 SMIM10L2BP0DMW5 78 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 IVDP26440 423 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 IFFO1Q0D2I5 559 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 KRT71Q3SY84 523 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 CCDC114Q96M63 670 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 CPXM1Q96SM3 734 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 RRAGCQ9HB90 399 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 NEU2Q9Y3R4 380 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 SIGLEC16A6NMB1 481 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 GPR32O75388 356 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 NPTXRO95502 500 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 ITGBL1O95965 494 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 SHBGP04278 402 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 CETN2P41208 172 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 GSCP56915 257 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 INCA1Q0VD86 236 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 MAP2K5Q13163 448 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 PDCLQ13371 301 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 SLMAPQ14BN4 828 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 DENND2CQ68D51 928 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 TXNRD3NBQ6F5E7 133 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 MFSD7Q6UXD7 560 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 KAT2BQ92831 832 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 KIF12Q96FN5 646 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 FAM118BQ9BPY3 351 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 SEMA4AQ9H3S1 761 aa22.3■■□□□ 1.16
CCDC88B-208ENST00000492980 A6NNZ2 444 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 HOXA11P31270 313 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 RFC1P35251 1148 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 PSMC1P62191 440 aaKnown RBP22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 ADCY2Q08462 1091 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 TUBB8Q3ZCM7 444 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 RHBDF2Q6PJF5 856 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 JOSD2Q8TAC2 188 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 PPP1R13LQ8WUF5 828 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 SNF8Q96H20 258 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 GCOM2Q9BZD3 368 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 FLRT1Q9NZU1 646 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 GINS2Q9Y248 185 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 DOCK3Q8IZD9 2030 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 TRIP11Q15643 1979 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 NRCAMQ92823 1304 aa22.29■■□□□ 1.16
CCDC88B-208ENST00000492980 ERBB2P04626 1255 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms