RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 PARD3BQ8TEW8 1205 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 KBTBD7Q8WVZ9 684 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 PKMYT1Q99640 499 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 SEPT5Q99719 369 aaPredicted RBP22.72■■□□□ 1.23
LIME1-207ENST00000489212 KXD1Q9BQD3 176 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 LPIN3Q9BQK8 851 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 ACBD6Q9BR61 282 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 ABI2Q9NYB9 513 aaPredicted RBP22.72■■□□□ 1.23
LIME1-207ENST00000489212 TRAF3IP3Q9Y228 551 aa22.72■■□□□ 1.23
LIME1-207ENST00000489212 LRRIQ3A6PVS8 624 aaPredicted RBP22.71■■□□□ 1.23
LIME1-207ENST00000489212 ATF6P18850 670 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 CLDN10P78369 228 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 TSPY1Q01534 308 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 FAM160A1Q05DH4 1040 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 SMARCB1Q12824 385 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 MGAT5BQ3V5L5 792 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 INTS6LQ5JSJ4 861 aaKnown RBP22.71■■□□□ 1.23
LIME1-207ENST00000489212 IER5LQ5T953 404 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 SMYD4Q8IYR2 804 aaPredicted RBP22.71■■□□□ 1.23
LIME1-207ENST00000489212 GUF1Q8N442 669 aaKnown RBP22.71■■□□□ 1.23
LIME1-207ENST00000489212 LEMD2Q8NC56 503 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 SHKBP1Q8TBC3 707 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 SPATA18Q8TC71 538 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 SPPL2BQ8TCT7 592 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 C2orf15Q8WU43 125 aaKnown RBP22.71■■□□□ 1.23
LIME1-207ENST00000489212 ZSWIM3Q96MP5 696 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 ZNF334Q9HCZ1 680 aaPredicted RBP22.71■■□□□ 1.23
LIME1-207ENST00000489212 FBXL21Q9UKT6 434 aa22.71■■□□□ 1.23
LIME1-207ENST00000489212 CALUO43852 315 aaPredicted RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 HAPLN1P10915 354 aaPredicted RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 FCARP24071 287 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 LHX1P48742 406 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 TUFMP49411 452 aaKnown RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 DLG4P78352 724 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 MYL7Q01449 175 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 TDRD10Q5VZ19 366 aaKnown RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 DPH6Q7L8W6 267 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 DNAJB7Q7Z6W7 309 aaPredicted RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 SIX5Q8N196 739 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 GPR152Q8TDT2 470 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 ERCC4Q92889 916 aaPredicted RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 PSMG2Q969U7 264 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 PLA2G2FQ9BZM2 168 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 XYLT2Q9H1B5 865 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 CIZ1Q9ULV3 898 aaPredicted RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 ARIH1Q9Y4X5 557 aaPredicted RBP22.7■■□□□ 1.22
LIME1-207ENST00000489212 ASB3Q9Y575 518 aa22.7■■□□□ 1.22
LIME1-207ENST00000489212 KRBA1A5PL33 1030 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 KIF20AO95235 890 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 NPR3P17342 541 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 LMO2P25791 158 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 AVPR2P30518 371 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 MYL6P60660 151 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 GPC5P78333 572 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 TEAD2Q15562 447 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 FAM78AQ5JUQ0 283 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 CEP135Q66GS9 1140 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 TANGO2Q6ICL3 276 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 CCDC34Q96HJ3 373 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 PI4K2AQ9BTU6 479 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 SLC2A4RGQ9NR83 387 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 WNT16Q9UBV4 365 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 GTF3C4Q9UKN8 822 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 NME7Q9Y5B8 376 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 PCDHB5Q9Y5E4 795 aa22.69■■□□□ 1.22
LIME1-207ENST00000489212 A0A1W2PRU2 124 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 MYBPHLA2RUH7 354 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 C4BPAP04003 597 aaKnown RBP22.68■■□□□ 1.22
LIME1-207ENST00000489212 WARSP23381 471 aaKnown RBP22.68■■□□□ 1.22
LIME1-207ENST00000489212 GPR15P49685 360 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 NFE2Q16621 373 aaPredicted RBP22.68■■□□□ 1.22
LIME1-207ENST00000489212 NFIL3Q16649 462 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 ZCWPW2Q504Y3 356 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 C1orf220Q5T0J3 134 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 CWF19L1Q69YN2 538 aaKnown RBP22.68■■□□□ 1.22
LIME1-207ENST00000489212 GAREM2Q75VX8 874 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 GIPC2Q8TF65 315 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 ASB16Q96NS5 453 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 MMS19Q96T76 1030 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 MRPL45Q9BRJ2 306 aaKnown RBP22.68■■□□□ 1.22
LIME1-207ENST00000489212 CA14Q9ULX7 337 aa22.68■■□□□ 1.22
LIME1-207ENST00000489212 ATP2C2O75185 946 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 GADD45BO75293 160 aaPredicted RBP22.67■■□□□ 1.22
LIME1-207ENST00000489212 ECI2O75521 394 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 AKAP3O75969 853 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 VNN1O95497 513 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 STAU1O95793 577 aaKnown RBP22.67■■□□□ 1.22
LIME1-207ENST00000489212 NR2F2P24468 414 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 PCSK1P29120 753 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 TRPC3Q13507 836 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 WDR72Q3MJ13 1102 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 STXBP5Q5T5C0 1151 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 FAM171BQ6P995 826 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 ITIH5Q86UX2 942 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 TMEM105Q8N8V8 129 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 SPATA20Q8TB22 786 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 FAM200AQ8TCP9 573 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 ELMO3Q96BJ8 720 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 TIGD1Q96MW7 591 aa22.67■■□□□ 1.22
LIME1-207ENST00000489212 MFSD1Q9H3U5 465 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms