RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	CLIC4	Q9Y696	253 aa		19.89	■□□□□ 0.77
HDAC6-231	ENST00000488905	ANAPC1	Q9H1A4	1944 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	IL18RAP	O95256	599 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	CENPB	P07199	599 aa	Predicted RBP	19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	WEE1	P30291	646 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	CXCL12	P48061	93 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	SV2C	Q496J9	727 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	WDR44	Q5JSH3	913 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	WSCD1	Q658N2	575 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	RALGPS2	Q86X27	583 aa	Predicted RBP	19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	NT5DC4	Q86YG4	428 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	SPEM1	Q8N4L4	309 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	BPIFB1	Q8TDL5	484 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	STRA6	Q9BX79	667 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	MRPL44	Q9H9J2	332 aa	Known RBP	19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	ABI2	Q9NYB9	513 aa	Predicted RBP	19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	GTSE1	Q9NYZ3	720 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	CCDC39	Q9UFE4	941 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	FBXO2	Q9UK22	296 aa	Predicted RBP	19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	RAB23	Q9ULC3	237 aa		19.88	■□□□□ 0.77
HDAC6-231	ENST00000488905	HELZ	P42694	1942 aa	Known RBP	19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	GREB1	Q4ZG55	1949 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	KPNA7	A9QM74	516 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	PLCB2	Q00722	1185 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	LMNB2	Q03252	620 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	POSTN	Q15063	836 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905		Q6ZS52	159 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	LRRTM3	Q86VH5	581 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	CELF5	Q8N6W0	485 aa	Known RBP	19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	TTC8	Q8TAM2	541 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	USP18	Q9UMW8	372 aa		19.87	■□□□□ 0.77
HDAC6-231	ENST00000488905	PTPRD	P23468	1912 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	MYMK	A6NI61	221 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	PAPSS2	O95340	614 aa	Predicted RBP	19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	HAPLN1	P10915	354 aa	Predicted RBP	19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	GAP43	P17677	238 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	PDC	P20941	246 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	TGM1	P22735	817 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	TXLNA	P40222	546 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	PNPLA4	P41247	253 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	KCNA1	Q09470	495 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	CUL4A	Q13619	759 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	TAF12	Q16514	161 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	LPAL2	Q16609	132 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	DGKK	Q5KSL6	1271 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	L1TD1	Q5T7N2	865 aa	Known RBP	19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	LAIR1	Q6GTX8	287 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	BRSK2	Q8IWQ3	736 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	DCP1B	Q8IZD4	617 aa	Known RBP	19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	GIPC2	Q8TF65	315 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	DNAJC19	Q96DA6	116 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	SMG9	Q9H0W8	520 aa	Known RBP	19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	ZMYM5	Q9UJ78	669 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	EXOC7	Q9UPT5	735 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	SRPRB	Q9Y5M8	271 aa	Known RBP	19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	MYO16	Q9Y6X6	1858 aa		19.86	■□□□□ 0.77
HDAC6-231	ENST00000488905	EML5	Q05BV3	1969 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	PRR5-ARHGAP8	B1AHC4	643 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	SDHB	P21912	280 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	WNT7B	P56706	349 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	ARHGAP8	P85298	464 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	TSPY1	Q01534	308 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	TNK2	Q07912	1038 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	CCIN	Q13939	588 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	PON2	Q15165	354 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	RRAGB	Q5VZM2	374 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	PRR23B	Q6ZRT6	265 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	SV2B	Q7L1I2	683 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	SAAL1	Q96ER3	474 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	CLIC6	Q96NY7	704 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	ACCS	Q96QU6	501 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	FAM213A	Q9BRX8	229 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	PARD6A	Q9NPB6	346 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	OLFML3	Q9NRN5	406 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	TBC1D7	Q9P0N9	293 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	CDV3	Q9UKY7	258 aa	Known RBP	19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	PCDHB5	Q9Y5E4	795 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	KIAA1549L	Q6ZVL6	1849 aa		19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	TPR	P12270	2363 aa	Known RBP	19.85	■□□□□ 0.77
HDAC6-231	ENST00000488905	CHURC1-FNTB	B4DL54	471 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905		K7ESF4	209 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	GCNT3	O95395	438 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	POLR2B	P30876	1174 aa	Known RBP	19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	FNTB	P49356	437 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	CASP5	P51878	434 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	TFAM	Q00059	246 aa	Known RBP	19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	DMWD	Q09019	674 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	REST	Q13127	1097 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	TMEM150A	Q86TG1	271 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	CMTM8	Q8IZV2	173 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	C1orf127	Q8N9H9	656 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	ZSWIM2	Q8NEG5	633 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	SLC46A2	Q9BY10	475 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	TMLHE	Q9NVH6	421 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	THG1L	Q9NWX6	298 aa	Known RBP	19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	RBAK	Q9NYW8	714 aa	Predicted RBP	19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	SDK1	Q7Z5N4	2213 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	LAMA1	P25391	3075 aa		19.84	■□□□□ 0.77
HDAC6-231	ENST00000488905	ITGB3	P05106	788 aa		19.83	■□□□□ 0.77
HDAC6-231	ENST00000488905	HMGA1	P17096	107 aa	Known RBP	19.83	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms