RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 IVLP07476 585 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 WEE2P0C1S8 567 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CD58P19256 250 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 PAFAH1B1P43034 410 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CCT5P48643 541 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 NOMO3P69849 1222 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CENPCQ03188 943 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 PTPN11Q06124 597 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-230ENST00000488543 MBTPS1Q14703 1052 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 NAA35Q5VZE5 725 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 SMYD5Q6GMV2 418 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 C11orf63Q6NUN7 778 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 FBXO46Q6PJ61 603 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-230ENST00000488543 TRAF7Q6Q0C0 670 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 SMG8Q8ND04 991 aaKnown RBP12.93□□□□□ -0.34
HDAC6-230ENST00000488543 CYFIP2Q96F07 1278 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 ZIM3Q96PE6 472 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 SDCBP2Q9H190 292 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 RNF14Q9UBS8 474 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 C2CD2Q9Y426 696 aa12.93□□□□□ -0.34
HDAC6-230ENST00000488543 KCNK3O14649 394 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 PQBP1O60828 265 aaKnown RBP12.92□□□□□ -0.34
HDAC6-230ENST00000488543 KRT19P08727 400 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 AXLP30530 894 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 SSTR3P32745 418 aaPredicted RBP12.92□□□□□ -0.34
HDAC6-230ENST00000488543 TRIM72Q6ZMU5 477 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 MCOLN2Q8IZK6 566 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 CPA5Q8WXQ8 436 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 CALR3Q96L12 384 aaKnown RBP12.92□□□□□ -0.34
HDAC6-230ENST00000488543 SNX27Q96L92 541 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 VRTNQ9H8Y1 702 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 PARP2Q9UGN5 583 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 AMFRQ9UKV5 643 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 IPPQ9Y573 584 aa12.92□□□□□ -0.34
HDAC6-230ENST00000488543 THAP12O43422 761 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 RECQL4O94761 1208 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 RAP1GAPP47736 663 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 IRAK1P51617 712 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 AFF1P51825 1210 aaKnown RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 GNGT1P63211 74 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 PDCLQ13371 301 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 MON1BQ7L1V2 547 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 FAM126BQ8IXS8 530 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF606Q8WXB4 792 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 CASKIN2Q8WXE0 1202 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 PBKQ96KB5 322 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 NUP85Q9BW27 656 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 NXF1Q9UBU9 619 aaKnown RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 SCN1AP35498 2009 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 POLR2BP30876 1174 aaKnown RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 ATICP31939 592 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 CFAP221Q4G0U5 840 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF667Q5HYK9 610 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 DDX42Q86XP3 938 aaKnown RBP eCLIP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 NT5DC4Q86YG4 428 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 PASD1Q8IV76 773 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 CD302Q8IX05 232 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 ZNF564Q8TBZ8 553 aaPredicted RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 LPPQ93052 612 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 C18orf25Q96B23 403 aaPredicted RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 KIF12Q96FN5 646 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 FAXDC2Q96IV6 333 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 SMYD3Q9H7B4 428 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 PLEKHA5Q9HAU0 1116 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 AVENQ9NQS1 362 aaPredicted RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 DPP3Q9NY33 737 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 UVRAGQ9P2Y5 699 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 CNOT8Q9UFF9 292 aaKnown RBP12.91□□□□□ -0.34
HDAC6-230ENST00000488543 ALG6Q9Y672 507 aa12.91□□□□□ -0.34
HDAC6-230ENST00000488543 PTP4A2Q12974 167 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 DCAF12L1Q5VU92 463 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 ALKAL1Q6UXT8 129 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 APBB1IPQ7Z5R6 666 aaPredicted RBP12.9□□□□□ -0.34
HDAC6-230ENST00000488543 CPNE8Q86YQ8 564 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 TFAP2BQ92481 460 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 BTBD6Q96KE9 485 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 ZFP42Q96MM3 310 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 AP1M1Q9BXS5 423 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 CRISPLD2Q9H0B8 497 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 PRDM16Q9HAZ2 1276 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 ERVK-5Q9HDB9 667 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 ITGA11Q9UKX5 1188 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 AGAP1Q9UPQ3 857 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 DERAQ9Y315 318 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 GPR182O15218 404 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 RAD51CO43502 376 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 STAU1O95793 577 aaKnown RBP12.9□□□□□ -0.34
HDAC6-230ENST00000488543 RRM1P23921 792 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 EPHB4P54760 987 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 CDH8P55286 799 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 PAK2Q13177 524 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 ZBTB6Q15916 424 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 WDR72Q3MJ13 1102 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 LLGL2Q6P1M3 1020 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 PHF13Q86YI8 300 aaPredicted RBP12.9□□□□□ -0.34
HDAC6-230ENST00000488543 RASGEF1CQ8N431 466 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 WHAMMQ8TF30 809 aa12.9□□□□□ -0.34
HDAC6-230ENST00000488543 TMEM110-MUSTN1A8MSY1 372 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CD4P01730 458 aa12.89□□□□□ -0.35
HDAC6-230ENST00000488543 CTCFP49711 727 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms