RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 GOLGA8IPA6NC78 632 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 GOLGA8JA6NMD2 632 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 SLC38A8A6NNN8 435 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 DPYSL4O14531 572 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 PRPF6O94906 941 aaKnown RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 LDHAP00338 332 aaKnown RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 GARTP22102 1010 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 WEE1P30291 646 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 POLR2BP30876 1174 aaKnown RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 KPNA1P52294 538 aaPredicted RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 SMARCB1Q12824 385 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 GAS6Q14393 721 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 ARHGAP15Q53QZ3 475 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 WDR44Q5JSH3 913 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 BRSK2Q8IWQ3 736 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 DCP1BQ8IZD4 617 aaKnown RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 SYCP3Q8IZU3 236 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 PDCL2Q8N4E4 241 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 C1orf127Q8N9H9 656 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 CXorf38Q8TB03 319 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 SPPL2BQ8TCT7 592 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 C2orf15Q8WU43 125 aaKnown RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 FAM84AQ96KN4 292 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 CBWD1Q9BRT8 395 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 PCIF1Q9H4Z3 704 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 C8orf33Q9H7E9 229 aaPredicted RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 RBM12Q9NTZ6 932 aaKnown RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 OBP2AQ9NY56 170 aa13.15□□□□□ -0.3
VPS16-208ENST00000487461 ABI2Q9NYB9 513 aaPredicted RBP13.15□□□□□ -0.3
VPS16-208ENST00000487461 ANK1P16157 1881 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 PATJQ8NI35 1801 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 MYBPHLA2RUH7 354 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 EXTL3O43909 919 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 PRAMEF12O95522 483 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 F11P03951 625 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 ITGB3P05106 788 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 HMGA1P17096 107 aaKnown RBP13.14□□□□□ -0.31
VPS16-208ENST00000487461 CDC25CP30307 473 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 PNPLA4P41247 253 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 GPR15P49685 360 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 VEPH1Q14D04 833 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 TAF12Q16514 161 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 ARHGAP29Q52LW3 1261 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 TXNDC11Q6PKC3 985 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 ERMP1Q7Z2K6 904 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 TMEM150AQ86TG1 271 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 CSGALNACT2Q8N6G5 542 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 PDILTQ8N807 584 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 CACTINQ8WUQ7 758 aaKnown RBP13.14□□□□□ -0.31
VPS16-208ENST00000487461 ZNF560Q96MR9 790 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 IER2Q9BTL4 223 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 PI4K2AQ9BTU6 479 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 FAM126AQ9BYI3 521 aaPredicted RBP13.14□□□□□ -0.31
VPS16-208ENST00000487461 SMG9Q9H0W8 520 aaKnown RBP13.14□□□□□ -0.31
VPS16-208ENST00000487461 EPC1Q9H2F5 836 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 ZSCAN16Q9H4T2 348 aaPredicted RBP13.14□□□□□ -0.31
VPS16-208ENST00000487461 PDE11AQ9HCR9 933 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 RBAKQ9NYW8 714 aaPredicted RBP13.14□□□□□ -0.31
VPS16-208ENST00000487461 GTSE1Q9NYZ3 720 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 L1RE1Q9UN81 338 aa13.14□□□□□ -0.31
VPS16-208ENST00000487461 COL4A2P08572 1712 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 TICRRQ7Z2Z1 1910 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 DCHS1Q96JQ0 3298 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 SPECC1L-ADORA2AF8WAN1 911 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 STX6O43752 255 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 PRPF40AO75400 957 aaKnown RBP13.13□□□□□ -0.31
VPS16-208ENST00000487461 CXCL12P48061 93 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 NASPP49321 788 aaPredicted RBP13.13□□□□□ -0.31
VPS16-208ENST00000487461 CCR3P51677 355 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 NLRP12P59046 1061 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 SATB1Q01826 763 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 TNK2Q07912 1038 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 BFSP1Q12934 665 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 ALCAMQ13740 583 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 SDHAF4Q5VUM1 108 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 LINC00301Q8NCQ3 95 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 STKLD1Q8NE28 680 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 GLIS3Q8NEA6 775 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 BPIFB1Q8TDL5 484 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 NOC3LQ8WTT2 800 aaKnown RBP13.13□□□□□ -0.31
VPS16-208ENST00000487461 HPS3Q969F9 1004 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 MSANTD3Q96H12 275 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 ACBD6Q9BR61 282 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 BACH2Q9BYV9 841 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 TMEM206Q9H813 350 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 NCDNQ9UBB6 729 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 TFIP11Q9UBB9 837 aaKnown RBP13.13□□□□□ -0.31
VPS16-208ENST00000487461 SIX4Q9UIU6 781 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 SMG5Q9UPR3 1016 aaKnown RBP13.13□□□□□ -0.31
VPS16-208ENST00000487461 PCDHB5Q9Y5E4 795 aa13.13□□□□□ -0.31
VPS16-208ENST00000487461 HCRTO43612 131 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 HUS1O60921 280 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 ACAT1P24752 427 aaKnown RBP13.12□□□□□ -0.31
VPS16-208ENST00000487461 CTHP32929 405 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 NRLP54845 237 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 RBP5P82980 135 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 TSPY1Q01534 308 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 PON2Q15165 354 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 STK38Q15208 465 aa13.12□□□□□ -0.31
VPS16-208ENST00000487461 E2F4Q16254 413 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms