RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 PCDH9Q9HC56 1237 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 FETUBQ9UGM5 382 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 IVNS1ABPQ9Y6Y0 642 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 WDR81Q562E7 1941 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 CLRN2A0PK11 232 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 DPPA5A6NC42 116 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 TMEM191CA6NGB0 347 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 ABLIM1O14639 778 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 BANF1O75531 89 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 ITGAVP06756 1048 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 TMEM191BP0C7N4 346 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 MYCLP12524 364 aaPredicted RBP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 ATP4AP20648 1035 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 ADRA1DP25100 572 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 RXRBP28702 533 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 PTPN7P35236 360 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 PEX19P40855 299 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 WNT7BP56706 349 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 TSNAXIP1Q2TAA8 658 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 LRRC38Q5VT99 294 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 C4orf50Q6ZRC1 276 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 RBBP8NLQ8NC74 664 aaPredicted RBP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 RFWD2Q8NHY2 731 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 FAM151AQ8WW52 585 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 CLUHO75153 1309 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 hCG_1818297A0A087WSY0 165 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 SGK1O00141 431 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 MRPS35P82673 323 aaKnown RBP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF252P-AS1Q0IIN9 211 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 EFTUD2Q15029 972 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 SEPT7Q16181 437 aaKnown RBP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 HIF1AQ16665 826 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 ADGRD1Q6QNK2 874 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 PCGF5Q86SE9 256 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 DNAJC9Q8WXX5 260 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 TMEM121Q9BTD3 319 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 DHRS4Q9BTZ2 278 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 TUBB6Q9BUF5 446 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 CADM1Q9BY67 442 aaKnown RBP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 YIPF3Q9GZM5 350 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 DCTN4Q9UJW0 460 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 CNTN6Q9UQ52 1028 aa12.85□□□□□ -0.35
COL3A1-206ENST00000487010 FARP1Q9Y4F1 1045 aaPredicted RBP12.85□□□□□ -0.35
COL3A1-206ENST00000487010 PTPRJQ12913 1337 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 WDR91A4D1P6 747 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 GOLGA8SH3BPF8 625 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 GOLGA8MH3BSY2 632 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 TM9SF1O15321 606 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 CCDC22O60826 627 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 MMP10P09238 476 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 MMP8P22894 467 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 GLRA2P23416 452 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 CALRP27797 417 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PHBP35232 272 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 CTCFP49711 727 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 TFDP1Q14186 410 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 KHDC1Q4VXA5 237 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 TFDP3Q5H9I0 405 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 RFWD3Q6PCD5 774 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 CPXCR1Q8N123 301 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PIAS4Q8N2W9 510 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 RDM1Q8NG50 284 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 TCP10LQ8TDR4 215 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PYROXD1Q8WU10 500 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 MZB1Q8WU39 189 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 HAUS1Q96CS2 278 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 VPS11Q9H270 941 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PDLIM7Q9NR12 457 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 SPATS2LQ9NUQ6 558 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 MAP3K20Q9NYL2 800 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PCDHA10Q9Y5I2 948 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 MYH9P35579 1960 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 ARID2Q68CP9 1835 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 CNTNAP1P78357 1384 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 F8VP50 259 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF862O60290 1169 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 STBD1O95210 358 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 IFNB1P01574 187 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PDHA1P08559 390 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 SSTR1P30872 391 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 CDKN2BP42772 138 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 LIG4P49917 911 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 RTP1P59025 263 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 NLRP11P59045 1033 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PLCB3Q01970 1234 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 OVGP1Q12889 678 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 LBRQ14739 615 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 FNBP1LQ5T0N5 605 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 TXNRD3NBQ6F5E7 133 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 BANPQ8N9N5 519 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 ATP11CQ8NB49 1132 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 SLC35B2Q8TB61 432 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PTCD3Q96EY7 689 aaKnown RBP12.84□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF333Q96JL9 665 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PAFAH2Q99487 392 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 BTBD10Q9BSF8 475 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 PHACTR1Q9C0D0 580 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 MANSC1Q9H8J5 431 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 HOMER2Q9NSB8 354 aa12.84□□□□□ -0.35
COL3A1-206ENST00000487010 ARL8BQ9NVJ2 186 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms