RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 RPLP2P05387 115 aaKnown RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 GHRP10912 638 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 RRM1P23921 792 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SERPINB6P35237 376 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 TSTA3Q13630 321 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ITIH4Q14624 930 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 P3H1Q32P28 736 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 PREPLQ4J6C6 727 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 NUDT18Q6ZVK8 323 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ANKMY2Q8IV38 441 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 YAF2Q8IY57 180 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ACSF2Q96CM8 615 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ZSWIM1Q9BR11 485 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 TUT1Q9H6E5 874 aaKnown RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 STARD7Q9NQZ5 370 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SIK3Q9Y2K2 1263 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 TRIM17Q9Y577 477 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 COPEO14579 308 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 APOL1O14791 398 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 RALAP11233 206 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 CATSPERGQ6ZRH7 1159 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SH3BP5LQ7L8J4 393 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SPATA2LQ8IUW3 424 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 CDKL3Q8IVW4 592 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 APLFQ8IW19 511 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 CCDC60Q8IWA6 550 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-228ENST00000486227 TRPM4Q8TD43 1214 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SPIRE2Q8WWL2 714 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 DPF3Q92784 378 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 DTNBP1Q96EV8 351 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 SYT17Q9BSW7 474 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 ZFP69BQ9UJL9 534 aa11.56□□□□□ -0.56
HDAC6-228ENST00000486227 EIF4E1BA6NMX2 242 aaKnown RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 H3BRJ5 948 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 IRF6O14896 467 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CST8O60676 142 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 KPNA6O60684 536 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 GPC4O75487 556 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 KRT38O76015 456 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 APOEP02649 317 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 SPATA31C1P0DKV0 1188 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 GZMAP12544 262 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 MTM1Q13496 603 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 PDCD2Q16342 344 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 HIF1AQ16665 826 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 BTBD8Q5XKL5 378 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 SLC13A5Q86YT5 568 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ATP11CQ8NB49 1132 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 SOCS4Q8WXH5 440 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ZBTB45Q96K62 511 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 TRAIPQ9BWF2 469 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 TRIM55Q9BYV6 548 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 AAASQ9NRG9 546 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 FAM53CQ9NYF3 392 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 COL14A1Q05707 1796 aaKnown RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ATP9AO75110 1047 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ZC3H11AO75152 810 aaKnown RBP eCLIP11.55□□□□□ -0.561e-6■■■■■ 36.9
HDAC6-228ENST00000486227 ZNF286BP0CG31 522 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 SLC26A2P50443 739 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CACNB2Q08289 660 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ASPHQ12797 758 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 AMHR2Q16671 573 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 KLHL38Q2WGJ6 581 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CBWD6Q4V339 395 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ANKRD20A8PQ5CZ79 823 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CBWD3Q5JTY5 395 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CBWD5Q5RIA9 395 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 PID1Q7Z2X4 250 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 PARD3BQ8TEW8 1205 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CPB2Q96IY4 423 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 RBM15Q96T37 977 aaKnown RBP eCLIP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 HSD17B14Q9BPX1 270 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 DPP3Q9NY33 737 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 CYP39A1Q9NYL5 469 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 F8W8V4 182 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 EPHB6O15197 1021 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 NKRFO15226 690 aaKnown RBP eCLIP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 KCNN4O15554 427 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ANP32DO95626 131 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ITIH2P19823 946 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ARHGEF19Q8IW93 802 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 METTL5Q9NRN9 209 aaKnown RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 GGA2Q9UJY4 613 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 PCDHB7Q9Y5E2 793 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 UBIAD1Q9Y5Z9 338 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ABCC6O95255 1503 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 A0A0U1RQJ8 604 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 SRRM3A6NNA2 597 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ANKRD63C9JTQ0 380 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 IGF2BP3O00425 579 aaKnown RBP eCLIP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 HNRNPCL1O60812 293 aaKnown RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ZWINTO95229 277 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 ATN1P54259 1190 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 MEA1Q16626 185 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 NAIF1Q69YI7 327 aaPredicted RBP11.55□□□□□ -0.56
HDAC6-228ENST00000486227 TTC30AQ86WT1 665 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 NUF2Q9BZD4 464 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 UBN1Q9NPG3 1134 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 IRAK4Q9NWZ3 460 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms