RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DNAJB5O75953 348 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 ZNF37AP17032 561 aaPredicted RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 VCAM1P19320 739 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 GCLCP48506 637 aaPredicted RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 NXPH1P58417 271 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 C21orf58P58505 322 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 ITIH3Q06033 890 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 PIN1Q13526 163 aaPredicted RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 NBPF8Q3BBV2 869 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 COLEC12Q5KU26 742 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 RBM20Q5T481 1227 aaKnown RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 IFIT1BQ5T764 474 aaKnown RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 RAVER1Q8IY67 606 aaKnown RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS41-213ENST00000485955 FAM46DQ8NEK8 389 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 RFKQ969G6 155 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 C1GALT1C1Q96EU7 318 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 OSBPL9Q96SU4 736 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 HEPHQ9BQS7 1158 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 TPSD1Q9BZJ3 242 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 DKK3Q9UBP4 350 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 ZNF180Q9UJW8 692 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 RAD54BQ9Y620 910 aa5.03□□□□□ -1.6
VPS41-213ENST00000485955 SETD1BQ9UPS6 1966 aaKnown RBP5.03□□□□□ -1.6
VPS41-213ENST00000485955 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 DCLK1O15075 740 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 OFD1O75665 1012 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 GNAI2P04899 355 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 PDHA1P08559 390 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 CT47B1P0C2W7 299 aaPredicted RBP5.02□□□□□ -1.61
VPS41-213ENST00000485955 PIM1P11309 404 aaPredicted RBP5.02□□□□□ -1.61
VPS41-213ENST00000485955 ITPKBP27987 946 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 ZNF134P52741 427 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 SOX8P57073 446 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 KHDC1LQ5JSQ8 128 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 AKNAD1Q5T1N1 836 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 EMC10Q5UCC4 262 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 B3GNT9Q6UX72 402 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 FAM109AQ8N4B1 249 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 KLHDC4Q8TBB5 520 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 DIS3LQ8TF46 1054 aaKnown RBP5.02□□□□□ -1.61
VPS41-213ENST00000485955 VOPP1Q96AW1 172 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 CDK5RAP3Q96JB5 506 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 LRGUKQ96M69 825 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 UROC1Q96N76 676 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 TIMP4Q99727 224 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 SPATA5L1Q9BVQ7 753 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 ACTRT3Q9BYD9 372 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 SIK2Q9H0K1 926 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 SERHLQ9NQF3 203 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 ARPP21Q9UBL0 812 aaPredicted RBP5.02□□□□□ -1.61
VPS41-213ENST00000485955 THRAP3Q9Y2W1 955 aaKnown RBP5.02□□□□□ -1.61
VPS41-213ENST00000485955 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS41-213ENST00000485955 ENTPD2Q9Y5L3 495 aa5.02□□□□□ -1.61
VPS41-213ENST00000485955 CCDC151A5D8V7 595 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 NR2F6P10588 404 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 ITGALP20701 1170 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 CD38P28907 300 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 MRPS21P82921 87 aaKnown RBP5.01□□□□□ -1.61
VPS41-213ENST00000485955 SP2Q02086 613 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 TSTD2Q5T7W7 516 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 FAM160B1Q5W0V3 765 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 SYCE2Q6PIF2 218 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 TMEM108Q6UXF1 575 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 PPP1R35Q8TAP8 253 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 SLC35G2Q8TBE7 412 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 BRIX1Q8TDN6 353 aaKnown RBP5.01□□□□□ -1.61
VPS41-213ENST00000485955 DDX17Q92841 729 aaKnown RBP5.01□□□□□ -1.61
VPS41-213ENST00000485955 SLC46A1Q96NT5 459 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 TTYH3Q9C0H2 523 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 CPNE5Q9HCH3 593 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 ANLNQ9NQW6 1124 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 STAP2Q9UGK3 403 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 PNMA8BQ9ULN7 279 aaPredicted RBP5.01□□□□□ -1.61
VPS41-213ENST00000485955 STXBP5LQ9Y2K9 1186 aa5.01□□□□□ -1.61
VPS41-213ENST00000485955 A0A088AWK7 358 aa5□□□□□ -1.61
VPS41-213ENST00000485955 PPM1DO15297 605 aa5□□□□□ -1.61
VPS41-213ENST00000485955 UNC5CO95185 931 aa5□□□□□ -1.61
VPS41-213ENST00000485955 MYBP10242 640 aa5□□□□□ -1.61
VPS41-213ENST00000485955 NCLP19338 710 aaKnown RBP5□□□□□ -1.61
VPS41-213ENST00000485955 CD6P30203 668 aa5□□□□□ -1.61
VPS41-213ENST00000485955 IL12RB1P42701 662 aa5□□□□□ -1.61
VPS41-213ENST00000485955 NHLH1Q02575 133 aa5□□□□□ -1.61
VPS41-213ENST00000485955 EPM2AIP1Q7L775 607 aaPredicted RBP5□□□□□ -1.61
VPS41-213ENST00000485955 COL23A1Q86Y22 540 aaPredicted RBP5□□□□□ -1.61
VPS41-213ENST00000485955 FKBP10Q96AY3 582 aa5□□□□□ -1.61
VPS41-213ENST00000485955 FAM136AQ96C01 138 aa5□□□□□ -1.61
VPS41-213ENST00000485955 NT5C1BQ96P26 610 aa5□□□□□ -1.61
VPS41-213ENST00000485955 ACO2Q99798 780 aaKnown RBP5□□□□□ -1.61
VPS41-213ENST00000485955 CDH19Q9H159 772 aa5□□□□□ -1.61
VPS41-213ENST00000485955 ZIM2Q9NZV7 527 aa5□□□□□ -1.61
VPS41-213ENST00000485955 GABBR1Q9UBS5 961 aa5□□□□□ -1.61
VPS41-213ENST00000485955 HESX1Q9UBX0 185 aa5□□□□□ -1.61
VPS41-213ENST00000485955 CPA4Q9UI42 421 aa5□□□□□ -1.61
VPS41-213ENST00000485955 ADAM21Q9UKJ8 722 aa5□□□□□ -1.61
VPS41-213ENST00000485955 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5□□□□□ -1.61
VPS41-213ENST00000485955 E2F8A0AVK6 867 aa4.99□□□□□ -1.61
VPS41-213ENST00000485955 RBMXL2O75526 392 aaKnown RBP4.99□□□□□ -1.61
VPS41-213ENST00000485955 SOAT2O75908 522 aa4.99□□□□□ -1.61
VPS41-213ENST00000485955 UBXN7O94888 489 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms