RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 COQ4Q9Y3A0 265 aa17.03■□□□□ 0.32
UPF3A-208ENST00000484246 CLUHO75153 1309 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 PRRG1O14668 218 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 FGFR1OPO95684 399 aaKnown RBP17.02■□□□□ 0.32
UPF3A-208ENST00000484246 P4HA1P13674 534 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 PIK3CAP42336 1068 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 NLRP12P59046 1061 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 TSPY1Q01534 308 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 PLD1Q13393 1074 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 NFE2Q16621 373 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-208ENST00000484246 DPCR1Q3MIW9 517 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 WDR72Q3MJ13 1102 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 ZNF667Q5HYK9 610 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 SPPL2BQ8TCT7 592 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 TAS1R2Q8TE23 839 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 NECAB3Q96P71 396 aaPredicted RBP17.02■□□□□ 0.32
UPF3A-208ENST00000484246 MED15Q96RN5 788 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 DACH1Q9UI36 760 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 YIPF1Q9Y548 306 aa17.02■□□□□ 0.32
UPF3A-208ENST00000484246 WEE2P0C1S8 567 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 ERCC5P28715 1186 aaPredicted RBP17.01■□□□□ 0.31
UPF3A-208ENST00000484246 FAM171BQ6P995 826 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 LRRTM3Q86VH5 581 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 TRIM59Q8IWR1 403 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 GJD3Q8N144 294 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 FUBP3Q96I24 572 aaKnown RBP eCLIP17.01■□□□□ 0.31
UPF3A-208ENST00000484246 IMPG2Q9BZV3 1241 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 CRISPLD1Q9H336 500 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 FAM124BQ9H5Z6 455 aaPredicted RBP17.01■□□□□ 0.31
UPF3A-208ENST00000484246 CDH9Q9ULB4 789 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 NR2E1Q9Y466 385 aa17.01■□□□□ 0.31
UPF3A-208ENST00000484246 LRG1P02750 347 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 EPHA5P54756 1037 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 STX17P56962 302 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 NOP14P78316 857 aaKnown RBP17■□□□□ 0.31
UPF3A-208ENST00000484246 CFAP221Q4G0U5 840 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 SLC39A12Q504Y0 691 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 DCAF17Q5H9S7 520 aaPredicted RBP17■□□□□ 0.31
UPF3A-208ENST00000484246 CCDC183Q5T5S1 534 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 ZDHHC14Q8IZN3 488 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 ATAD1Q8NBU5 361 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 FBXL13Q8NEE6 735 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 TTC28Q96AY4 2481 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 PGLYRP2Q96PD5 576 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 MMS19Q96T76 1030 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 SYT15Q9BQS2 421 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 MRPL45Q9BRJ2 306 aaKnown RBP17■□□□□ 0.31
UPF3A-208ENST00000484246 BCO2Q9BYV7 579 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 PIDD1Q9HB75 910 aa17■□□□□ 0.31
UPF3A-208ENST00000484246 NXF1Q9UBU9 619 aaKnown RBP17■□□□□ 0.31
UPF3A-208ENST00000484246 DENND4AQ7Z401 1863 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 P4HA2O15460 535 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CCL16O15467 120 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 N4BP1O75113 896 aaKnown RBP16.99■□□□□ 0.31
UPF3A-208ENST00000484246 ASPAP45381 313 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 TUFMP49411 452 aaKnown RBP16.99■□□□□ 0.31
UPF3A-208ENST00000484246 INCA1Q0VD86 236 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 DUSP4Q13115 394 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 MAPRE1Q15691 268 aaKnown RBP16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CCDC40Q4G0X9 1142 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CBWD6Q4V339 395 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CBWD3Q5JTY5 395 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CBWD5Q5RIA9 395 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 OTOP3Q7RTS5 596 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 TDRD5Q8NAT2 981 aaKnown RBP16.99■□□□□ 0.31
UPF3A-208ENST00000484246 LEMD2Q8NC56 503 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 NIF3L1Q9GZT8 377 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 SMYD3Q9H7B4 428 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CYP3A43Q9HB55 503 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 APOBEC3GQ9HC16 384 aaKnown RBP16.99■□□□□ 0.31
UPF3A-208ENST00000484246 CD320Q9NPF0 282 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 TMLHEQ9NVH6 421 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 RAB20Q9NX57 234 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 RAPGEFL1Q9UHV5 662 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 POLIQ9UNA4 740 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 ASB3Q9Y575 518 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 NME7Q9Y5B8 376 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 PCDHB5Q9Y5E4 795 aa16.99■□□□□ 0.31
UPF3A-208ENST00000484246 MICAL2O94851 1124 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 HAPLN1P10915 354 aaPredicted RBP16.98■□□□□ 0.31
UPF3A-208ENST00000484246 ACAT1P24752 427 aaKnown RBP16.98■□□□□ 0.31
UPF3A-208ENST00000484246 LMO2P25791 158 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 TWF1Q12792 350 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 TCERG1LQ5VWI1 586 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 GRASPQ7Z6J2 395 aaPredicted RBP16.98■□□□□ 0.31
UPF3A-208ENST00000484246 PLCD3Q8N3E9 789 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 TTC9BQ8N6N2 239 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 CCDC150Q8NCX0 1101 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 SEMA4DQ92854 862 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 SRRTQ9BXP5 876 aaKnown RBP16.98■□□□□ 0.31
UPF3A-208ENST00000484246 SDCBP2Q9H190 292 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 DNAJC25Q9H1X3 360 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 SNX25Q9H3E2 840 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 CRTAC1Q9NQ79 661 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 EPS15L1Q9UBC2 864 aa16.98■□□□□ 0.31
UPF3A-208ENST00000484246 DNMT3BQ9UBC3 853 aaKnown RBP16.98■□□□□ 0.31
UPF3A-208ENST00000484246 ZFP37Q9Y6Q3 630 aaPredicted RBP16.98■□□□□ 0.31
UPF3A-208ENST00000484246 MYBPHLA2RUH7 354 aa16.97■□□□□ 0.31
UPF3A-208ENST00000484246 C2CD4DB7Z1M9 353 aa16.97■□□□□ 0.31
UPF3A-208ENST00000484246 TNFRSF10AO00220 468 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms