RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 HASPINQ8TF76 798 aa8.79□□□□□ -1
USP4-210ENST00000483212 ZNF606Q8WXB4 792 aa8.79□□□□□ -1
USP4-210ENST00000483212 TMEM176AQ96HP8 235 aa8.79□□□□□ -1
USP4-210ENST00000483212 DPEP3Q9H4B8 488 aa8.79□□□□□ -1
USP4-210ENST00000483212 TAS2R14Q9NYV8 317 aa8.79□□□□□ -1
USP4-210ENST00000483212 PCDHB8Q9UN66 801 aa8.79□□□□□ -1
USP4-210ENST00000483212 PCDHGC3Q9UN70 934 aa8.79□□□□□ -1
USP4-210ENST00000483212 STXBP5LQ9Y2K9 1186 aa8.79□□□□□ -1
USP4-210ENST00000483212 PPP2R2CQ9Y2T4 447 aa8.79□□□□□ -1
USP4-210ENST00000483212 ATP8B3O60423 1300 aa8.79□□□□□ -1
USP4-210ENST00000483212 ESPNB1AK53 854 aa8.78□□□□□ -1
USP4-210ENST00000483212 O00370 1275 aa8.78□□□□□ -1
USP4-210ENST00000483212 AKR1B10O60218 316 aa8.78□□□□□ -1
USP4-210ENST00000483212 GJB5O95377 273 aa8.78□□□□□ -1
USP4-210ENST00000483212 ABL1P00519 1130 aa8.78□□□□□ -1
USP4-210ENST00000483212 CCDC175P0C221 793 aa8.78□□□□□ -1
USP4-210ENST00000483212 VDRP11473 427 aa8.78□□□□□ -1
USP4-210ENST00000483212 UNGP13051 313 aaPredicted RBP8.78□□□□□ -1
USP4-210ENST00000483212 TYMPP19971 482 aa8.78□□□□□ -1
USP4-210ENST00000483212 TNFAIP3P21580 790 aa8.78□□□□□ -1
USP4-210ENST00000483212 CDH5P33151 784 aaPredicted RBP8.78□□□□□ -1
USP4-210ENST00000483212 PBX3P40426 434 aa8.78□□□□□ -1
USP4-210ENST00000483212 BCAR1P56945 870 aa8.78□□□□□ -1
USP4-210ENST00000483212 RNASELQ05823 741 aaKnown RBP8.78□□□□□ -1
USP4-210ENST00000483212 DSTYKQ6XUX3 929 aa8.78□□□□□ -1
USP4-210ENST00000483212 DNAAF5Q86Y56 855 aa8.78□□□□□ -1
USP4-210ENST00000483212 TMEM86AQ8N2M4 240 aa8.78□□□□□ -1
USP4-210ENST00000483212 WDTC1Q8N5D0 677 aa8.78□□□□□ -1
USP4-210ENST00000483212 OR6B3Q8NGW1 331 aa8.78□□□□□ -1
USP4-210ENST00000483212 PPP1R13BQ96KQ4 1090 aa8.78□□□□□ -1
USP4-210ENST00000483212 FAM193BQ96PV7 902 aaPredicted RBP8.78□□□□□ -1
USP4-210ENST00000483212 PKMYT1Q99640 499 aa8.78□□□□□ -1
USP4-210ENST00000483212 NT5C1AQ9BXI3 368 aa8.78□□□□□ -1
USP4-210ENST00000483212 PACSIN1Q9BY11 444 aa8.78□□□□□ -1
USP4-210ENST00000483212 ISCUQ9H1K1 167 aa8.78□□□□□ -1
USP4-210ENST00000483212 DEF6Q9H4E7 631 aa8.78□□□□□ -1
USP4-210ENST00000483212 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.78□□□□□ -1
USP4-210ENST00000483212 TFR2Q9UP52 801 aa8.78□□□□□ -1
USP4-210ENST00000483212 PRG3Q9Y2Y8 225 aaPredicted RBP8.78□□□□□ -1
USP4-210ENST00000483212 PCDHA13Q9Y5I0 950 aa8.78□□□□□ -1
USP4-210ENST00000483212 TIMM13Q9Y5L4 95 aaPredicted RBP8.78□□□□□ -1
USP4-210ENST00000483212 MRPL42Q9Y6G3 142 aaKnown RBP8.78□□□□□ -1
USP4-210ENST00000483212 A8MXQ7 604 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 PJA2O43164 708 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 THAP12O43422 761 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 ZNF500O60304 480 aaPredicted RBP8.77□□□□□ -1.01
USP4-210ENST00000483212 ALDH2P05091 517 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 ODC1P11926 461 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 GZMAP12544 262 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 FGFR3P22607 806 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 GNL1P36915 607 aaPredicted RBP8.77□□□□□ -1.01
USP4-210ENST00000483212 VAV2P52735 878 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 NOMO3P69849 1222 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 KRT83P78385 493 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 CENPCQ03188 943 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 PTP4A2Q12974 167 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 MRPL58Q14197 206 aaKnown RBP8.77□□□□□ -1.01
USP4-210ENST00000483212 CNGA2Q16280 664 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 CCDC142Q17RM4 750 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 CLEC16AQ2KHT3 1053 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 PKDCCQ504Y2 493 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 ARHGAP17Q68EM7 881 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 FAM117BQ6P1L5 589 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 DENND1BQ6P3S1 775 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 ALKBH5Q6P6C2 394 aaKnown RBP8.77□□□□□ -1.01
USP4-210ENST00000483212 LCLAT1Q6UWP7 414 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 ACOT1Q86TX2 421 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 VPS36Q86VN1 386 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 OR10T2Q8NGX3 314 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 PHOSPHO2Q8TCD6 241 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 CYFIP2Q96F07 1278 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 PHF12Q96QT6 1004 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 LPIN3Q9BQK8 851 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP4-210ENST00000483212 COLEC11Q9BWP8 271 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 VN1R3Q9BXE9 311 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 GPR62Q9BZJ7 368 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 LACRTQ9GZZ8 138 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 SNX25Q9H3E2 840 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 CRTAC1Q9NQ79 661 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 TRIM10Q9UDY6 481 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 ADAM28Q9UKQ2 775 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 KIAA1257Q9ULG3 409 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 FAN1Q9Y2M0 1017 aa8.77□□□□□ -1.01
USP4-210ENST00000483212 KIAA1671Q9BY89 1806 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 ZBBXA8MT70 800 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 NT5C1B-RDH14C9J2C7 533 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 SYN3O14994 580 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 ZSCAN12O43309 604 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 TBC1D4O60343 1298 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 ATP2C2O75185 946 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 MICAL2O94851 1124 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 OAZ2O95190 189 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 LSM8O95777 96 aaKnown RBP8.76□□□□□ -1.01
USP4-210ENST00000483212 PDGFRBP09619 1106 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 CD19P15391 556 aa8.76□□□□□ -1.01
USP4-210ENST00000483212 ACAT1P24752 427 aaKnown RBP8.76□□□□□ -1.01
USP4-210ENST00000483212 TKTP29401 623 aaKnown RBP8.76□□□□□ -1.01
USP4-210ENST00000483212 SSTR3P32745 418 aaPredicted RBP8.76□□□□□ -1.01
USP4-210ENST00000483212 GPD2P43304 727 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms