RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FXR1P51114 621 aaKnown RBP eCLIP13.05□□□□□ -0.32
SDC1-206ENST00000482879 RAD23BP54727 409 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ERVFC1P60507 584 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ZBED6P86452 979 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 TBX2Q13207 712 aaPredicted RBP13.05□□□□□ -0.32
SDC1-206ENST00000482879 ORC1Q13415 861 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 PSMD5Q16401 504 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ZNF280DQ6N043 979 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 GPR65Q8IYL9 337 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 FAM71AQ8IYT1 594 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 RBBP8NLQ8NC74 664 aaPredicted RBP13.05□□□□□ -0.32
SDC1-206ENST00000482879 MICAL1Q8TDZ2 1067 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 AUTS2Q8WXX7 1259 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 TWNKQ96RR1 684 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 TCF25Q9BQ70 676 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 RTP3Q9BQQ7 232 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ACBD6Q9BR61 282 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 GPR88Q9GZN0 384 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ELOVL4Q9GZR5 314 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 DNAI2Q9GZS0 605 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ZNF576Q9H609 170 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 ENTPD7Q9NQZ7 604 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 TLR9Q9NR96 1032 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 HMGXB4Q9UGU5 601 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 CDH9Q9ULB4 789 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 MYO6Q9UM54 1294 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 CNTN6Q9UQ52 1028 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 SSX2IPQ9Y2D8 614 aa13.05□□□□□ -0.32
SDC1-206ENST00000482879 EPOPA6NHQ4 379 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 OR6C75A6NL08 312 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 LRRC53A6NM62 1247 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 RFXAPO00287 272 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 CYP26A1O43174 497 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 LPXNO60711 386 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 ATP2C2O75185 946 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 GFPT2O94808 682 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 RPL17P18621 184 aaKnown RBP13.04□□□□□ -0.32
SDC1-206ENST00000482879 KRT9P35527 623 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 TSPY1Q01534 308 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 GOLGA8FQ08AF8 430 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 GOLGA8DPQ0D2H9 430 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 PTPN14Q15678 1187 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 SFMBT2Q5VUG0 894 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 PLPP4Q5VZY2 271 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 SMYD5Q6GMV2 418 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 ACOT1Q86TX2 421 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 CRYBG2Q8N1P7 616 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 SLC4A11Q8NBS3 891 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 OR10T2Q8NGX3 314 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 GDPD5Q8WTR4 605 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 TMEM176AQ96HP8 235 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 TNIP3Q96KP6 325 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 HEXIM2Q96MH2 286 aaKnown RBP13.04□□□□□ -0.32
SDC1-206ENST00000482879 TMEM209Q96SK2 561 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 SYT15Q9BQS2 421 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 OXCT2Q9BYC2 517 aaPredicted RBP13.04□□□□□ -0.32
SDC1-206ENST00000482879 DPEP3Q9H4B8 488 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 MTRRQ9UBK8 725 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 BACE2Q9Y5Z0 518 aa13.04□□□□□ -0.32
SDC1-206ENST00000482879 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 GOLGA6L6A8MZA4 724 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 AKR1B15C9JRZ8 316 aaPredicted RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 SOX1O00570 391 aaPredicted RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 FSCN2O14926 492 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 TBC1D4O60343 1298 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 LILRB3O75022 631 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 PAEPP09466 180 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 CD19P15391 556 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 PTPN1P18031 435 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 CLCN1P35523 988 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 ZNF132P52740 706 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 ADKP55263 362 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 ARPP19P56211 112 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 BPIFB4P59827 614 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 PSMC1P62191 440 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 ARID5AQ03989 594 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 PTK2Q05397 1052 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 CAMK1Q14012 370 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 SMC1AQ14683 1233 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 TSR1Q2NL82 804 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 INTS6LQ5JSJ4 861 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 PDE12Q6L8Q7 609 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 RSPO2Q6UXX9 243 aaPredicted RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 FMNL3Q8IVF7 1028 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 GLYCTKQ8IVS8 523 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 DCP1BQ8IZD4 617 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 B3GALNT2Q8NCR0 500 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 OR8K1Q8NGG5 319 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 LPIN3Q9BQK8 851 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 CLSTN3Q9BQT9 956 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 ZCWPW1Q9H0M4 648 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 LMAN2LQ9H0V9 348 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 NUCKS1Q9H1E3 243 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 RXFP1Q9HBX9 757 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 NGRNQ9NPE2 291 aaKnown RBP13.03□□□□□ -0.32
SDC1-206ENST00000482879 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.03□□□□□ -0.32
SDC1-206ENST00000482879 IMPACTQ9P2X3 320 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 CDY1Q9Y6F8 540 aa13.03□□□□□ -0.32
SDC1-206ENST00000482879 COL4A4P53420 1690 aaPredicted RBP13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms