RNA–Protein interactions for RNA: ENST00000481173.1

CCNL1-223, Transcript of cyclin L1, human

TSL 2

Gene CCNL1, Length 571 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-223	ENST00000481173	PHKA1	P46020	1223 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	HLX	Q14774	488 aa	Predicted RBP	4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	SLC44A4	Q53GD3	710 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	AWAT2	Q6E213	333 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	PPP4R3A	Q6IN85	833 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	TAPT1	Q6NXT6	567 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	ZNF517	Q6ZMY9	492 aa	Predicted RBP	4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	RFK	Q969G6	155 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	VKORC1	Q9BQB6	163 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	SPRTN	Q9H040	489 aa	Predicted RBP	4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	SLAMF7	Q9NQ25	335 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	ELOVL5	Q9NYP7	299 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	SH3BP4	Q9P0V3	963 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	CALCOCO1	Q9P1Z2	691 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	DKK3	Q9UBP4	350 aa		4.28	□□□□□ -1.72
CCNL1-223	ENST00000481173	SMIM22	K7EJ46	135 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	PPP6C	O00743	305 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	PPEF2	O14830	753 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	CERS1	P27544	350 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	PSMC1	P62191	440 aa	Known RBP	4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	PROSER3	Q2NL68	480 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	CCDC93	Q567U6	631 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	TMPRSS9	Q7Z410	1059 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	TTC7B	Q86TV6	843 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	NSUN6	Q8TEA1	469 aa	Known RBP	4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	TRIB1	Q96RU8	372 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	ANLN	Q9NQW6	1124 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	MRPS18A	Q9NVS2	196 aa	Known RBP	4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZNF580	Q9UK33	172 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173	PCDHA3	Q9Y5H8	950 aa		4.27	□□□□□ -1.73
CCNL1-223	ENST00000481173		A0A0B4J269	797 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZNF785	A8K8V0	405 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	TISP43	B9A030	160 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	ALG1L2	C9J202	215 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	TOP3B	O95985	862 aa	Known RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	RPLP2	P05387	115 aa	Known RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	GJB1	P08034	283 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	CBSL	P0DN79	551 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZFX	P17010	805 aa	Predicted RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	SFPQ	P23246	707 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	SMARCA1	P28370	1054 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	TKT	P29401	623 aa	Known RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	CCKBR	P32239	447 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	CBS	P35520	551 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	ADK	P55263	362 aa	Known RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	FOXG1	P55316	489 aa	Predicted RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	PIGF	Q07326	219 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	TUBB3	Q13509	450 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZNF260	Q3ZCT1	412 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	PRAMEF17	Q5VTA0	474 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	SLC4A10	Q6U841	1118 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	AOPEP	Q8N6M6	819 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	FKBP10	Q96AY3	582 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	C1orf43	Q9BWL3	253 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	TPSD1	Q9BZJ3	242 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	SMOC2	Q9H3U7	446 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	BRD9	Q9H8M2	597 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	MAN1C1	Q9NR34	630 aa		4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	CFAP20	Q9Y6A4	193 aa	Known RBP	4.26	□□□□□ -1.73
CCNL1-223	ENST00000481173	PRSS29P	A6NIE9	313 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	NT5C1B-RDH14	C9J2C7	533 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173		F5H697	171 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	POLRMT	O00411	1230 aa	Known RBP	4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	VPS4B	O75351	444 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZRANB2	O95218	330 aa	Known RBP eCLIP	4.25	□□□□□ -1.73	4e-6	■■□□□ 12.8
CCNL1-223	ENST00000481173	LPO	P22079	712 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	PCSK6	P29122	969 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	POLG	P54098	1239 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	KRT85	P78386	507 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	MIER2	Q8N344	545 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	REPS1	Q96D71	796 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	CAMKK2	Q96RR4	588 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	SMO	Q99835	787 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	EHD3	Q9NZN3	535 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	AGAP1	Q9UPQ3	857 aa		4.25	□□□□□ -1.73
CCNL1-223	ENST00000481173	KCNU1	A8MYU2	1149 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173		E7ENX8	843 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	JUP	P14923	745 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	CHRM3	P20309	590 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	PDC	P20941	246 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	ZNF135	P52742	658 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	POU6F2	P78424	691 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	TAP2	Q03519	686 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	TBCC	Q15814	346 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	PLAC9	Q5JTB6	97 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	CEP85	Q6P2H3	762 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	C3orf20	Q8ND61	904 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	POC1B	Q8TC44	478 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	SCAMP4	Q969E2	229 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	ALG8	Q9BVK2	526 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	ADGRE3	Q9BY15	652 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	ACTRT3	Q9BYD9	372 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	ASPSCR1	Q9BZE9	553 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	SLC13A1	Q9BZW2	595 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	SERTAD4	Q9NUC0	356 aa		4.24	□□□□□ -1.73
CCNL1-223	ENST00000481173	JTB	O76095	146 aa		4.23	□□□□□ -1.73
CCNL1-223	ENST00000481173	KIF20A	O95235	890 aa		4.23	□□□□□ -1.73
CCNL1-223	ENST00000481173	ONECUT2	O95948	504 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms