RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 CEP83Q9Y592 693 aa13.77□□□□□ -0.21
SEC13-216ENST00000479868 ECM2O94769 699 aaPredicted RBP13.76□□□□□ -0.21
SEC13-216ENST00000479868 KRT10P13645 584 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 ACVR2BQ13705 512 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 PTK6Q13882 451 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 SLC4A11Q8NBS3 891 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 ATL2Q8NHH9 583 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 NPLOC4Q8TAT6 608 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 BCAS4Q8TDM0 211 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 WHRNQ9P202 907 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 DOCK3Q8IZD9 2030 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 CAND2O75155 1236 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 CILPO75339 1184 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 HOXD8P13378 290 aaPredicted RBP13.76□□□□□ -0.21
SEC13-216ENST00000479868 POLR2BP30876 1174 aaKnown RBP13.76□□□□□ -0.21
SEC13-216ENST00000479868 CCNG2Q16589 344 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 KAZNQ674X7 775 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 MFSD7Q6UXD7 560 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 CCDC25Q86WR0 208 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 OR6J1Q8NGC5 347 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 UHMK1Q8TAS1 419 aaKnown RBP13.76□□□□□ -0.21
SEC13-216ENST00000479868 GRK7Q8WTQ7 553 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 PPP1R13LQ8WUF5 828 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 ACSF2Q96CM8 615 aaPredicted RBP13.76□□□□□ -0.21
SEC13-216ENST00000479868 SLITRK1Q96PX8 696 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 ELOVL4Q9GZR5 314 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 LHX5Q9H2C1 402 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 GBA2Q9HCG7 927 aaPredicted RBP13.76□□□□□ -0.21
SEC13-216ENST00000479868 AAASQ9NRG9 546 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 RSPH14Q9UHP6 348 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 NEU2Q9Y3R4 380 aa13.76□□□□□ -0.21
SEC13-216ENST00000479868 A0A1B0GUA9 196 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 A6NNZ2 444 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 GOLGA8SH3BPF8 625 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 GAS8O95995 478 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 KRT1P04264 644 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 PAEPP09466 180 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 RARGP13631 454 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 LSP1P33241 339 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 RFC1P35251 1148 aaPredicted RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 MDH1P40925 334 aaKnown RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 VPS41P49754 854 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 MAGOHP61326 146 aaKnown RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 PTPN11Q06124 597 aaPredicted RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 SLMAPQ14BN4 828 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 TMEM132DQ14C87 1099 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 TUBB8Q3ZCM7 444 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 ZFYVE27Q5T4F4 411 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 RHBDF2Q6PJF5 856 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 PLEKHH3Q7Z736 793 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 SNF8Q96H20 258 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 CPXM1Q96SM3 734 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 ABHD16BQ9H3Z7 469 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 SETD4Q9NVD3 440 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 SLC12A6Q9UHW9 1150 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 RIPK2O43353 540 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 MED7O43513 233 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 ATF7P17544 494 aaPredicted RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 ITIH2P19823 946 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 CHKAP35790 457 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 TAP1Q03518 808 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 TMEM62Q0P6H9 643 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 PIGHQ14442 188 aaPredicted RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 DGKDQ16760 1214 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 FAM110CQ1W6H9 321 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 KIZQ2M2Z5 673 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 ODF2Q5BJF6 829 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 SPRYD7Q5W111 196 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 SYDE1Q6ZW31 735 aaPredicted RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 RCOR2Q8IZ40 523 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 JOSD2Q8TAC2 188 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 RAPGEF5Q92565 580 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 HPDLQ96IR7 371 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 PARK7Q99497 189 aaKnown RBP13.75□□□□□ -0.21
SEC13-216ENST00000479868 FAM129AQ9BZQ8 928 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 CXCL16Q9H2A7 254 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 VRTNQ9H8Y1 702 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 HOMER3Q9NSC5 361 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 STRIP2Q9ULQ0 834 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 AGAP1Q9UPQ3 857 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 CENPFP49454 3210 aa13.75□□□□□ -0.21
SEC13-216ENST00000479868 ATICP31939 592 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 ITGA8P53708 1063 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 LRRC38Q5VT99 294 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 PRUNE1Q86TP1 453 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 NIPA2Q8N8Q9 360 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 TLCD1Q96CP7 247 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 TMEM176AQ96HP8 235 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 FAXDC2Q96IV6 333 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 RBM41Q96IZ5 413 aaKnown RBP13.74□□□□□ -0.21
SEC13-216ENST00000479868 ACAP3Q96P50 834 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 FEZ2Q9UHY8 353 aaPredicted RBP13.74□□□□□ -0.21
SEC13-216ENST00000479868 GINS2Q9Y248 185 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 ERBB2P04626 1255 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 KRT3P12035 628 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 ADCY8P40145 1251 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 CCT5P48643 541 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 PSMC1P62191 440 aaKnown RBP13.74□□□□□ -0.21
SEC13-216ENST00000479868 PPP2R2AP63151 447 aa13.74□□□□□ -0.21
SEC13-216ENST00000479868 PRAMEF19Q5SWL8 479 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms