RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 DNAJB1P25685 340 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 SSTR3P32745 418 aaPredicted RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 BMPR1AP36894 532 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 USP8P40818 1118 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 ALDH7A1P49419 539 aaKnown RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 FMO1Q01740 532 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 PTK2Q05397 1052 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 VARS2Q5ST30 1063 aaKnown RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 PRSS55Q6UWB4 352 aaPredicted RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 PAQR9Q6ZVX9 377 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 ACOT1Q86TX2 421 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 LRRTM3Q86VH5 581 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 UNC93AQ86WB7 457 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 TDHQ8IZJ6 230 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 CRYBG2Q8N1P7 616 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 C12orf29Q8N999 325 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 KLHL23Q8NBE8 558 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 OR6B3Q8NGW1 331 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 TMEM176AQ96HP8 235 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 NKX2-4Q9H2Z4 354 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 FAM124BQ9H5Z6 455 aaPredicted RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 DDX43Q9NXZ2 648 aaKnown RBP13.97□□□□□ -0.17
CHD3-210ENST00000479080 PLXNA4Q9HCM2 1894 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 CHD7Q9P2D1 2997 aa13.97□□□□□ -0.17
CHD3-210ENST00000479080 MYBPHLA2RUH7 354 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 A8MXQ7 604 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 C5orf67F2Z3F1 127 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 DDX3XO00571 662 aaKnown RBP eCLIP13.96□□□□□ -0.17
CHD3-210ENST00000479080 VNN2O95498 520 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 SOD2P04179 222 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 SERPING1P05155 500 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 MMEP08473 750 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 PAEPP09466 180 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 TPM1P09493 284 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 CTNNB1P35222 781 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 DEKP35659 375 aaKnown RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 GNL1P36915 607 aaPredicted RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 EIF4A3P38919 411 aaKnown RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 CDR1P51861 262 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 YWHAEP62258 255 aaKnown RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 CDK17Q00537 523 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 PLCB3Q01970 1234 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 MAPK8IP2Q13387 824 aaPredicted RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 TAF3Q5VWG9 929 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 SMYD5Q6GMV2 418 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 OVOS1Q6IE37 1185 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 DDX53Q86TM3 631 aaKnown RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 DNAAF5Q86Y56 855 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 ZNF397Q8NF99 534 aaPredicted RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 SLC30A5Q8TAD4 765 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 SPATA18Q8TC71 538 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 AUTS2Q8WXX7 1259 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 SYT15Q9BQS2 421 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 NT5C1AQ9BXI3 368 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 ZBP1Q9H171 429 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 NUCKS1Q9H1E3 243 aaKnown RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 TMEM30AQ9NV96 361 aa13.96□□□□□ -0.17
CHD3-210ENST00000479080 REXO2Q9Y3B8 237 aaKnown RBP13.96□□□□□ -0.17
CHD3-210ENST00000479080 PDE4DIPQ5VU43 2346 aa13.96□□□□□ -0.18
CHD3-210ENST00000479080 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.95□□□□□ -0.18
CHD3-210ENST00000479080 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.95□□□□□ -0.18
CHD3-210ENST00000479080 FAM170AA1A519 330 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 EPOPA6NHQ4 379 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 O00370 1275 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 LILRB3O75022 631 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 CCDC130P13994 396 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 GNA15P30679 374 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 ERVK-21P61565 698 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 DSG1Q02413 1049 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 YWHAHQ04917 246 aaPredicted RBP13.95□□□□□ -0.18
CHD3-210ENST00000479080 KLHL30Q0D2K2 578 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 CAMK1Q14012 370 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 INTS6LQ5JSJ4 861 aaKnown RBP13.95□□□□□ -0.18
CHD3-210ENST00000479080 PPP1R26Q5T8A7 1209 aaPredicted RBP13.95□□□□□ -0.18
CHD3-210ENST00000479080 FAM171BQ6P995 826 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 B3GALNT2Q8NCR0 500 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 ZNF606Q8WXB4 792 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 PIK3R5Q8WYR1 880 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 TMEM169Q96HH4 297 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 BAG1Q99933 345 aaPredicted RBP13.95□□□□□ -0.18
CHD3-210ENST00000479080 AGPAT1Q99943 283 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 TTPALQ9BTX7 342 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 SNX25Q9H3E2 840 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 FAM49BQ9NUQ9 324 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 TAS2R14Q9NYV8 317 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 PYCARDQ9ULZ3 195 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 PCDHGC5Q9Y5F6 944 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.95□□□□□ -0.18
CHD3-210ENST00000479080 NLRC5Q86WI3 1866 aa13.95□□□□□ -0.18
CHD3-210ENST00000479080 A0A087X0T9 212 aa13.94□□□□□ -0.18
CHD3-210ENST00000479080 SSU72P8A0A1W2PR75 194 aa13.94□□□□□ -0.18
CHD3-210ENST00000479080 GOLGA6L6A8MZA4 724 aa13.94□□□□□ -0.18
CHD3-210ENST00000479080 CLDN5O00501 218 aa13.94□□□□□ -0.18
CHD3-210ENST00000479080 TRAPPC3O43617 180 aa13.94□□□□□ -0.18
CHD3-210ENST00000479080 PTMAP06454 111 aaKnown RBP13.94□□□□□ -0.18
CHD3-210ENST00000479080 FAM228BP0C875 321 aa13.94□□□□□ -0.18
CHD3-210ENST00000479080 PTPN1P18031 435 aaKnown RBP13.94□□□□□ -0.18
CHD3-210ENST00000479080 RPL17P18621 184 aaKnown RBP13.94□□□□□ -0.18
CHD3-210ENST00000479080 PPM1AP35813 382 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms