RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 PYM1Q9BRP8 204 aaKnown RBP14.61□□□□□ -0.07
CHD3-209ENST00000473376 LRRC27Q9C0I9 530 aa14.61□□□□□ -0.07
CHD3-209ENST00000473376 ZSCAN16Q9H4T2 348 aaPredicted RBP14.61□□□□□ -0.07
CHD3-209ENST00000473376 TMEM206Q9H813 350 aa14.61□□□□□ -0.07
CHD3-209ENST00000473376 MRPL44Q9H9J2 332 aaKnown RBP14.61□□□□□ -0.07
CHD3-209ENST00000473376 KIF9Q9HAQ2 790 aa14.61□□□□□ -0.07
CHD3-209ENST00000473376 IL21Q9HBE4 155 aa14.61□□□□□ -0.07
CHD3-209ENST00000473376 GDAP2Q9NXN4 497 aa14.61□□□□□ -0.07
CHD3-209ENST00000473376 NDRG2Q9UN36 371 aaKnown RBP14.61□□□□□ -0.07
CHD3-209ENST00000473376 SMG5Q9UPR3 1016 aaKnown RBP14.61□□□□□ -0.07
CHD3-209ENST00000473376 COL4A2P08572 1712 aa14.61□□□□□ -0.07
CHD3-209ENST00000473376 CTHP32929 405 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 MGAT5BQ3V5L5 792 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 GPR158Q5T848 1215 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 LAIR1Q6GTX8 287 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 DPH6Q7L8W6 267 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 DGLUCYQ7Z3D6 616 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 RSPRY1Q96DX4 576 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 TMEM209Q96SK2 561 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 ITGA11Q9UKX5 1188 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 PCDHB5Q9Y5E4 795 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 CLIC4Q9Y696 253 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 GPR179Q6PRD1 2367 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 FRYLO94915 3013 aa14.6□□□□□ -0.07
CHD3-209ENST00000473376 CCDC163A0A0D9SF12 145 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 MYMKA6NI61 221 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 SPECC1L-ADORA2AF8WAN1 911 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 CSH1P0DML2 217 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 CSH2P0DML3 217 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 ATF6P18850 670 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 SYT1P21579 422 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 KPNA1P52294 538 aaPredicted RBP14.59□□□□□ -0.07
CHD3-209ENST00000473376 AMPD2Q01433 879 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 TSPY1Q01534 308 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 CCINQ13939 588 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 ZNF268Q14587 947 aaPredicted RBP14.59□□□□□ -0.07
CHD3-209ENST00000473376 SLC39A14Q15043 492 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 SURF1Q15526 300 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 TAF12Q16514 161 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 WSCD1Q658N2 575 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 STXBP4Q6ZWJ1 553 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 USP49Q70CQ1 688 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 DYMQ7RTS9 669 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 LRRTM3Q86VH5 581 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 EFCAB13Q8IY85 973 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 CMTM8Q8IZV2 173 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 KIAA1958Q8N8K9 716 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 EXOC4Q96A65 974 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 TRMT2BQ96GJ1 504 aaKnown RBP14.59□□□□□ -0.07
CHD3-209ENST00000473376 FUBP3Q96I24 572 aaKnown RBP eCLIP14.59□□□□□ -0.07
CHD3-209ENST00000473376 MYRFLQ96LU7 910 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 SEPT5Q99719 369 aaPredicted RBP14.59□□□□□ -0.07
CHD3-209ENST00000473376 FAM83CQ9BQN1 747 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 CUEDC2Q9H467 287 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 UXTQ9UBK9 157 aaPredicted RBP14.59□□□□□ -0.07
CHD3-209ENST00000473376 GMEB2Q9UKD1 530 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 RAB23Q9ULC3 237 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 NCANO14594 1321 aa14.59□□□□□ -0.07
CHD3-209ENST00000473376 VPS37CA5D8V6 355 aaPredicted RBP14.58□□□□□ -0.08
CHD3-209ENST00000473376 EXTL3O43909 919 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 F11P03951 625 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 FAM163BP0C2L3 166 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 HMGA1P17096 107 aaKnown RBP14.58□□□□□ -0.08
CHD3-209ENST00000473376 TGM1P22735 817 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 LHX1P48742 406 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 RPL10AP62906 217 aaKnown RBP14.58□□□□□ -0.08
CHD3-209ENST00000473376 RESTQ13127 1097 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 ITPRIPL2Q3MIP1 535 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 CFAP221Q4G0U5 840 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 CNNM4Q6P4Q7 775 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 LONP2Q86WA8 852 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 TMEM130Q8N3G9 435 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 DCLK2Q8N568 766 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 TTC9BQ8N6N2 239 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 TOP6BLQ8N6T0 577 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 CXorf38Q8TB03 319 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 FAM200AQ8TCP9 573 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 LRRC3BQ96PB8 259 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 SLC46A2Q9BY10 475 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 KIAA1586Q9HCI6 787 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 COL4A3Q01955 1670 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 DMXL1Q9Y485 3027 aa14.58□□□□□ -0.08
CHD3-209ENST00000473376 TISP43B9A030 160 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 GABRDO14764 452 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 HUS1O60921 280 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 ATG13O75143 517 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 GCNT3O95395 438 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 RETP07949 1114 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 PFKLP17858 780 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 PCSK1P29120 753 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 AVPR1AP37288 418 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 NASPP49321 788 aaPredicted RBP14.57□□□□□ -0.08
CHD3-209ENST00000473376 NLRP12P59046 1061 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 SNRPFP62306 86 aaKnown RBP14.57□□□□□ -0.08
CHD3-209ENST00000473376 RBP5P82980 135 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 MYL7Q01449 175 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 GAS6Q14393 721 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 STXBP5Q5T5C0 1151 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 TSSK4Q6SA08 328 aa14.57□□□□□ -0.08
CHD3-209ENST00000473376 LIMS2Q7Z4I7 341 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms