RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SMC2	O95347	1197 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	SRF	P11831	508 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	GJA1	P17302	382 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	ACAT1	P24752	427 aa	Known RBP	12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	PCSK1	P29120	753 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	LHX1	P48742	406 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	EHHADH	Q08426	723 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	SMARCB1	Q12824	385 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	HTR4	Q13639	388 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	PSMD6	Q15008	389 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	NFE2	Q16621	373 aa	Predicted RBP	12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	BMT2	Q1RMZ1	405 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	SLC5A9	Q2M3M2	681 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	CENPP	Q6IPU0	288 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	PARM1	Q6UWI2	310 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	ASCL5	Q7RTU5	278 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	TRAPPC11	Q7Z392	1133 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	SPATA2L	Q8IUW3	424 aa	Predicted RBP	12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	PDCL2	Q8N4E4	241 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	KIAA0895	Q8NCT3	520 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	GIPC2	Q8TF65	315 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	C2orf15	Q8WU43	125 aa	Known RBP	12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	FGF14	Q92915	247 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	PI4K2A	Q9BTU6	479 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	ZCWPW1	Q9H0M4	648 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	SNX25	Q9H3E2	840 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	ATXN3L	Q9H3M9	355 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	RMND1	Q9NWS8	449 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	GDE1	Q9NZC3	331 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	CEP72	Q9P209	647 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	L1RE1	Q9UN81	338 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	MAGED2	Q9UNF1	606 aa	Predicted RBP	12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	KIF26A	Q9ULI4	1882 aa	Predicted RBP	12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373	PTPRD	P23468	1912 aa		12.37	□□□□□ -0.43
CPNE1-222	ENST00000473373		A0A1W2PRU2	124 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	PDXK	O00764	312 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	DPYSL4	O14531	572 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	FGF19	O95750	216 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	NR3C1	P04150	777 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	KRT13	P13646	458 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	TRIM21	P19474	475 aa	Known RBP	12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	PNOC	Q13519	176 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	SCN4B	Q8IWT1	228 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	YAF2	Q8IY57	180 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	TTC9B	Q8N6N2	239 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	TOP6BL	Q8N6T0	577 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	TMEM105	Q8N8V8	129 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	OR6B3	Q8NGW1	331 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	GPR152	Q8TDT2	470 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	SYAP1	Q96A49	352 aa	Predicted RBP	12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	TCEAL4	Q96EI5	215 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	LPIN3	Q9BQK8	851 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	MMRN2	Q9H8L6	949 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	ZFP14	Q9HCL3	533 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	NXF1	Q9UBU9	619 aa	Known RBP	12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	ASB3	Q9Y575	518 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	PTPRJ	Q12913	1337 aa		12.36	□□□□□ -0.43
CPNE1-222	ENST00000473373	GREB1	Q4ZG55	1949 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	KIN	O60870	393 aa	Known RBP	12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	RHOBTB3	O94955	611 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	PAPLN	O95428	1278 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	PDGFRB	P09619	1106 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	NR2F2	P24468	414 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	RPL13	P26373	211 aa	Known RBP	12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	ANXA13	P27216	316 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	GABRR2	P28476	465 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	CASP4	P49662	377 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	AP3M2	P53677	418 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	PFKP	Q01813	784 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	CYP27A1	Q02318	531 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	DPYD	Q12882	1025 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	TEAD2	Q15562	447 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	ZNF699	Q32M78	642 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	WDR72	Q3MJ13	1102 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	INTS6L	Q5JSJ4	861 aa	Known RBP	12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	ASTL	Q6HA08	431 aa	Predicted RBP	12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	C4orf50	Q6ZRC1	276 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	C12orf56	Q8IXR9	622 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	CCDC150	Q8NCX0	1101 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	SMARCE1	Q969G3	411 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	SHD	Q96IW2	340 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	TSG101	Q99816	390 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	SYT15	Q9BQS2	421 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	ACBD6	Q9BR61	282 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	IMPG2	Q9BZV3	1241 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	GPR88	Q9GZN0	384 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	BRD9	Q9H8M2	597 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	GDAP2	Q9NXN4	497 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	SIX4	Q9UIU6	781 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	MYO16	Q9Y6X6	1858 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	ZDBF2	Q9HCK1	2354 aa		12.35	□□□□□ -0.43
CPNE1-222	ENST00000473373	FAM237A	A0A1B0GTK4	181 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	PROB1	E7EW31	1015 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	ANHX	E9PGG2	379 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	HAPLN1	P10915	354 aa	Predicted RBP	12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	P4HA1	P13674	534 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	CDC25C	P30307	473 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	PIK3CA	P42336	1068 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	NUBP1	P53384	320 aa		12.34	□□□□□ -0.43
CPNE1-222	ENST00000473373	PSMC1	P62191	440 aa	Known RBP	12.34	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms