RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ATL3Q6DD88 541 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 UNC13DQ70J99 1090 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 CSGALNACT2Q8N6G5 542 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 SUMF1Q8NBK3 374 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 ZSCAN18Q8TBC5 510 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 FAM200AQ8TCP9 573 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 LPIN3Q9BQK8 851 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 HSPBP1Q9NZL4 362 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 ITGA11Q9UKX5 1188 aa16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 EP300Q09472 2414 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-205ENST00000472524 SHISA7A6NL88 538 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 KIAA0391O15091 583 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 LAMTOR5O43504 91 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 TARSP26639 723 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 VIPR2P41587 438 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 CSTF1Q05048 431 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 CNNM4Q6P4Q7 775 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 EPM2AIP1Q7L775 607 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 DNAJB7Q7Z6W7 309 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 LRRTM3Q86VH5 581 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 CBWD2Q8IUF1 395 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 NELFCDQ8IXH7 590 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 GRAMD1CQ8IYS0 662 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 RUBCNQ92622 972 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 SMARCD2Q92925 531 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 ANKRD36BP1Q96IX9 119 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 LRRC3Q9BY71 257 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 OSBPL6Q9BZF3 934 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 BRD9Q9H8M2 597 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 ZNF334Q9HCZ1 680 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 HEBP1Q9NRV9 189 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 ABI2Q9NYB9 513 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 L1RE1Q9UN81 338 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 ASB3Q9Y575 518 aa16.92■□□□□ 0.3
CCDC88B-205ENST00000472524 ZNF233A6NK53 670 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 CLIC2O15247 247 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 HUS1O60921 280 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 TUFMP49411 452 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 TSPY1Q01534 308 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 CUL4BQ13620 913 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 STXBP5Q5T5C0 1151 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 VITQ6UXI7 678 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 ITIH5Q86UX2 942 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 CEP57L1Q8IYX8 460 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 PDCL2Q8N4E4 241 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 LRRC52Q8N7C0 313 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 RDH13Q8NBN7 331 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 ZNF507Q8TCN5 953 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 GIPC2Q8TF65 315 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 PSMG2Q969U7 264 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 CLDN23Q96B33 292 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 SERTAD1Q9UHV2 236 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 SIX4Q9UIU6 781 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 RCOR1Q9UKL0 485 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 FBXO4Q9UKT5 387 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 R3HCC1Q9Y3T6 440 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 PTPRDP23468 1912 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 GREB1Q4ZG55 1949 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 UBE4BO95155 1302 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 PTPRJQ12913 1337 aa16.91■□□□□ 0.3
CCDC88B-205ENST00000472524 DNAH14Q0VDD8 3507 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 KINO60870 393 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 TNNC2P02585 160 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 ATF6P18850 670 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 GABRR2P28476 465 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 GDI1P31150 447 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 CYP2J2P51589 502 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 RBP5P82980 135 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 VEPH1Q14D04 833 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 SURF1Q15526 300 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 ZNF528Q3MIS6 628 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 TSSK4Q6SA08 328 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 GAREM2Q75VX8 874 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 GPIHBP1Q8IV16 184 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 DCP1BQ8IZD4 617 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 OR5B17Q8NGF7 314 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 CXorf38Q8TB03 319 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 SPPL2BQ8TCT7 592 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 C2orf15Q8WU43 125 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 SCFD1Q8WVM8 642 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 CHAMP1Q96JM3 812 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 TRMT61BQ9BVS5 477 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 GPR88Q9GZN0 384 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 ATXN3LQ9H3M9 355 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 SLC39A2Q9NP94 309 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 AGPAT3Q9NRZ7 376 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 TMLHEQ9NVH6 421 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 INTS13Q9NVM9 706 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 DDX43Q9NXZ2 648 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 HSFX1Q9UBD0 423 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 SNX9Q9Y5X1 595 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 NCANO14594 1321 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 ANAPC1Q9H1A4 1944 aa16.9■□□□□ 0.3
CCDC88B-205ENST00000472524 HEPACAM2A8MVW5 462 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 TGFB1I1O43294 461 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 HAPLN1P10915 354 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 PSMC3P17980 439 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 ACAT1P24752 427 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 MYL7Q01449 175 aa16.89■□□□□ 0.29
CCDC88B-205ENST00000472524 EHHADHQ08426 723 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms