RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SDR16C5	Q8N3Y7	309 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	SLC15A4	Q8N697	577 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	ATP11C	Q8NB49	1132 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	ACRBP	Q8NEB7	543 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	OR56A3	Q8NH54	315 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	IL17D	Q8TAD2	202 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	CPT1C	Q8TCG5	803 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	MESP1	Q9BRJ9	268 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	TEX101	Q9BY14	249 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	XPNPEP3	Q9NQH7	507 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	PARPBP	Q9NWS1	579 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	RNF181	Q9P0P0	153 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	DKK2	Q9UBU2	259 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	DMTF1	Q9Y222	760 aa		4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.68	□□□□□ -1.66
PTCD3-209	ENST00000472044	PRAMEF33	A0A0G2JMD5	474 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	ABHD14A-ACY1	A0A1B0GW23	586 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	AREL1	O15033	823 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	TPD52L2	O43399	206 aa	Known RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	PRAMEF10	O60809	474 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	SUN1	O94901	812 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	MT-ND5	P03915	603 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	HLA-DOA	P06340	250 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	ANXA2	P07355	339 aa	Known RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	ATXN1L	P0C7T5	689 aa	Known RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	TXN	P10599	105 aa	Known RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	IL1R1	P14778	569 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	BMPR1A	P36894	532 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	ANXA11	P50995	505 aa	Known RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	ADAM17	P78536	824 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	DYRK1A	Q13627	763 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	BOP1	Q14137	746 aa	Known RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	HLX	Q14774	488 aa	Predicted RBP	4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	KRT72	Q14CN4	511 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	IQCB1	Q15051	598 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	BEAN1	Q3B7T3	259 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	DCAF12L1	Q5VU92	463 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	XRRA1	Q6P2D8	792 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	CLNK	Q7Z7G1	428 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	C1orf210	Q8IVY1	113 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	EXTL1	Q92935	676 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	SPSB4	Q96A44	273 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	SNX22	Q96L94	193 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZSWIM1	Q9BR11	485 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	SELENOO	Q9BVL4	669 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	CHST8	Q9H2A9	424 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	PLCB1	Q9NQ66	1216 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	MYO1A	Q9UBC5	1043 aa		4.67	□□□□□ -1.66
PTCD3-209	ENST00000472044	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	CLCA1	A8K7I4	914 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	TMEM233	B4DJY2	109 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	APOL1	O14791	398 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	DCLK1	O15075	740 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	NCK2	O43639	380 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	ERN1	O75460	977 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	NCR1	O76036	304 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZNF20	P17024	532 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	RPS7	P62081	194 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	CXADR	P78310	365 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	FAM189B	P81408	668 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	CYP2A13	Q16696	494 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	SPATS1	Q496A3	300 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	USP39	Q53GS9	565 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	SP5	Q6BEB4	398 aa	Predicted RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	HIBCH	Q6NVY1	386 aa	Predicted RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	TAF2	Q6P1X5	1199 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	CATSPERG	Q6ZRH7	1159 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	PSD4	Q8NDX1	1056 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	NSUN7	Q8NE18	718 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	MYEOV	Q96EZ4	313 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	SLC46A1	Q96NT5	459 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	DHX36	Q9H2U1	1008 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	ZNF768	Q9H5H4	540 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	AKIP1	Q9NQ31	210 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	TRMT13	Q9NUP7	481 aa	Known RBP	4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	CAPN11	Q9UMQ6	739 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	DAAM1	Q9Y4D1	1078 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	RAD54B	Q9Y620	910 aa		4.66	□□□□□ -1.66
PTCD3-209	ENST00000472044	TMEM200C	A6NKL6	621 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	C1QTNF3-AMACR	E9PGA6	284 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	CCP110	O43303	1012 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	THAP12	O43422	761 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	PPFIA4	O75335	1185 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	VPS4B	O75351	444 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	EIF3J	O75822	258 aa	Known RBP	4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZFPL1	O95159	310 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	FGFR2	P21802	821 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	NR4A1	P22736	598 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZFP36	P26651	326 aa	Known RBP	4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	LRPAP1	P30533	357 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	GCLC	P48506	637 aa	Predicted RBP	4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	CARS	P49589	748 aa	Known RBP	4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	LOXL3	P58215	753 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	SLC25A3	Q00325	362 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	ARL13B	Q3SXY8	428 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	SPDYE7P	Q495Y7	208 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	SPDYA	Q5MJ70	313 aa		4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	4.65	□□□□□ -1.67
PTCD3-209	ENST00000472044	SLC30A10	Q6XR72	485 aa		4.65	□□□□□ -1.67

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