RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 POMGNT1Q8WZA1 660 aa22.25■■□□□ 1.15
COL6A1-203ENST00000466285 SLC46A2Q9BY10 475 aa22.25■■□□□ 1.15
COL6A1-203ENST00000466285 ASB7Q9H672 318 aa22.25■■□□□ 1.15
COL6A1-203ENST00000466285 PTPRDP23468 1912 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 HELZP42694 1942 aaKnown RBP22.24■■□□□ 1.15
COL6A1-203ENST00000466285 MYBPHLA2RUH7 354 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 GOLGA8IPA6NC78 632 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 OTOL1A6NHN0 477 aaPredicted RBP22.24■■□□□ 1.15
COL6A1-203ENST00000466285 GOLGA8JA6NMD2 632 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 CHURC1-FNTBB4DL54 471 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 TADA3O75528 432 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 BMP15O95972 392 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 FNTBP49356 437 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 KPNA1P52294 538 aaPredicted RBP22.24■■□□□ 1.15
COL6A1-203ENST00000466285 PON2Q15165 354 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 NAIF1Q69YI7 327 aaPredicted RBP22.24■■□□□ 1.15
COL6A1-203ENST00000466285 OSTM1Q86WC4 334 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 TSPAN18Q96SJ8 248 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 FAM213AQ9BRX8 229 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 GPR88Q9GZN0 384 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 PTPRJQ12913 1337 aa22.24■■□□□ 1.15
COL6A1-203ENST00000466285 RALGAPA1Q6GYQ0 2036 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 HAPLN1P10915 354 aaPredicted RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 HMGA1P17096 107 aaKnown RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 ACAT1P24752 427 aaKnown RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 POLR2BP30876 1174 aaKnown RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 MCM2P49736 904 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 PUM1Q14671 1186 aaKnown RBP eCLIP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 TRIM68Q6AZZ1 485 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 C1orf127Q8N9H9 656 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 KRI1Q8N9T8 703 aaKnown RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 CBWD1Q9BRT8 395 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 POLR3BQ9NW08 1133 aaPredicted RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 L1RE1Q9UN81 338 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 ASB3Q9Y575 518 aa22.23■■□□□ 1.15
COL6A1-203ENST00000466285 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.23■■□□□ 1.15
COL6A1-203ENST00000466285 KPNA7A9QM74 516 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 TULP1O00294 542 aaPredicted RBP22.22■■□□□ 1.15
COL6A1-203ENST00000466285 ITGB3P05106 788 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 SCP2P22307 547 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 CCR3P51677 355 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 L1TD1Q5T7N2 865 aaKnown RBP22.22■■□□□ 1.15
COL6A1-203ENST00000466285 LMBRD2Q68DH5 695 aaPredicted RBP22.22■■□□□ 1.15
COL6A1-203ENST00000466285 HEATR6Q6AI08 1181 aaKnown RBP22.22■■□□□ 1.15
COL6A1-203ENST00000466285 ITIH5Q86UX2 942 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 BRSK2Q8IWQ3 736 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 PDCL2Q8N4E4 241 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 HPS3Q969F9 1004 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 USP28Q96RU2 1077 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 PKMYT1Q99640 499 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 PI4K2AQ9BTU6 479 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 TASP1Q9H6P5 420 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 MRPL44Q9H9J2 332 aaKnown RBP22.22■■□□□ 1.15
COL6A1-203ENST00000466285 HPS4Q9NQG7 708 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 HSFX1Q9UBD0 423 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 STK17AQ9UEE5 414 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 USP18Q9UMW8 372 aa22.22■■□□□ 1.15
COL6A1-203ENST00000466285 HRO43593 1189 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 CXCL12P48061 93 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 TFAMQ00059 246 aaKnown RBP22.21■■□□□ 1.15
COL6A1-203ENST00000466285 SPEM2Q0P670 501 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 CCINQ13939 588 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 SLFN12LQ6IEE8 588 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 MAMSTRQ6ZN01 415 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 PRR23BQ6ZRT6 265 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 BPIFB1Q8TDL5 484 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 E2F7Q96AV8 911 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 HVCN1Q96D96 273 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 PANK2Q9BZ23 570 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 FOXD4L1Q9NU39 408 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 SIX4Q9UIU6 781 aa22.21■■□□□ 1.15
COL6A1-203ENST00000466285 SRPRBQ9Y5M8 271 aaKnown RBP22.21■■□□□ 1.15
COL6A1-203ENST00000466285 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.21■■□□□ 1.15
COL6A1-203ENST00000466285 GCNT3O95395 438 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 SYT1P21579 422 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 NLRP12P59046 1061 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 VEPH1Q14D04 833 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 ARHGAP29Q52LW3 1261 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 SPEM1Q8N4L4 309 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 USP13Q92995 863 aaPredicted RBP22.2■■□□□ 1.14
COL6A1-203ENST00000466285 FAM126AQ9BYI3 521 aaPredicted RBP22.2■■□□□ 1.14
COL6A1-203ENST00000466285 PCIF1Q9H4Z3 704 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 DSEQ9UL01 958 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 AGAP1Q9UPQ3 857 aa22.2■■□□□ 1.14
COL6A1-203ENST00000466285 FRMD3A2A2Y4 597 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 DPYSL4O14531 572 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 EXTL3O43909 919 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 F11P03951 625 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 ARSAP15289 507 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 TUFMP49411 452 aaKnown RBP22.19■■□□□ 1.14
COL6A1-203ENST00000466285 ATXN1P54253 815 aaKnown RBP22.19■■□□□ 1.14
COL6A1-203ENST00000466285 MLLT6P55198 1093 aaPredicted RBP22.19■■□□□ 1.14
COL6A1-203ENST00000466285 BFSP1Q12934 665 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 SV2CQ496J9 727 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 ARHGAP15Q53QZ3 475 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 RRAGBQ5VZM2 374 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 TXNDC8Q6A555 127 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 RALGPS2Q86X27 583 aaPredicted RBP22.19■■□□□ 1.14
COL6A1-203ENST00000466285 METTL23Q86XA0 190 aa22.19■■□□□ 1.14
COL6A1-203ENST00000466285 CMTM8Q8IZV2 173 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms