RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ZNF707Q96C28 371 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-202ENST00000452372 PHOX2BQ99453 314 aa21.4■■□□□ 1.02
COL9A3-202ENST00000452372 PRKD2Q9BZL6 878 aa21.4■■□□□ 1.02
COL9A3-202ENST00000452372 VRTNQ9H8Y1 702 aa21.4■■□□□ 1.02
COL9A3-202ENST00000452372 DOCK8Q8NF50 2099 aa21.4■■□□□ 1.02
COL9A3-202ENST00000452372 HNRNPA1P09651 372 aaKnown RBP eCLIP21.39■■□□□ 1.01
COL9A3-202ENST00000452372 OR4Q2P0C623 313 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 TRIM49P0CI25 452 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 TRIM49CP0CI26 452 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 HOXA9P31269 272 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 ELF1P32519 619 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 GTF2H1P32780 548 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 GCLMP48507 274 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 STX17P56962 302 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 PPP3CAQ08209 521 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 WDR72Q3MJ13 1102 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 PPM1LQ5SGD2 360 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 RNF19BQ6ZMZ0 732 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 UBALD2Q8IYN6 164 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 PLCD3Q8N3E9 789 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 TDRD5Q8NAT2 981 aaKnown RBP21.39■■□□□ 1.01
COL9A3-202ENST00000452372 SLC7A14Q8TBB6 771 aa21.39■■□□□ 1.01
COL9A3-202ENST00000452372 GABRDO14764 452 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 N4BP1O75113 896 aaKnown RBP21.38■■□□□ 1.01
COL9A3-202ENST00000452372 FAM163BP0C2L3 166 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 LHX1P48742 406 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 MRE11P49959 708 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 ADCY1Q08828 1119 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 SUGP1Q8IWZ8 645 aaKnown RBP21.38■■□□□ 1.01
COL9A3-202ENST00000452372 SMG7Q92540 1137 aaKnown RBP21.38■■□□□ 1.01
COL9A3-202ENST00000452372 TMEM209Q96SK2 561 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 MMS19Q96T76 1030 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 ACBD6Q9BR61 282 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 ZCWPW1Q9H0M4 648 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 CYP4F11Q9HBI6 524 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 METTL14Q9HCE5 456 aaKnown RBP21.38■■□□□ 1.01
COL9A3-202ENST00000452372 TMEM8AQ9HCN3 771 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 ARMCX3Q9UH62 379 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-202ENST00000452372 RWDD2AQ9UIY3 292 aa21.38■■□□□ 1.01
COL9A3-202ENST00000452372 PRRG1O14668 218 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 STX10O60499 249 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 SEC24AO95486 1093 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 VNN2O95498 520 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 POU2F2P09086 479 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 MYL7Q01449 175 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 MTMR3Q13615 1198 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 SGSM1Q2NKQ1 1148 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 RBM43Q6ZSC3 357 aaKnown RBP21.37■■□□□ 1.01
COL9A3-202ENST00000452372 FRMD5Q7Z6J6 570 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 OSTM1Q86WC4 334 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 ADGRF2Q8IZF7 708 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 TAF4BQ92750 862 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 DDX43Q9NXZ2 648 aaKnown RBP21.37■■□□□ 1.01
COL9A3-202ENST00000452372 USP34Q70CQ2 3546 aa21.37■■□□□ 1.01
COL9A3-202ENST00000452372 TACC1O75410 805 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 HLA-DRAP01903 254 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 NLRP12P59046 1061 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 TNNC1P63316 161 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 SMARCB1Q12824 385 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 ZNF699Q32M78 642 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 ZNF667Q5HYK9 610 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 KRT39Q6A163 491 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 KBTBD7Q8WVZ9 684 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 PGLYRP2Q96PD5 576 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 PIDD1Q9HB75 910 aa21.36■■□□□ 1.01
COL9A3-202ENST00000452372 NXF1Q9UBU9 619 aaKnown RBP21.36■■□□□ 1.01
COL9A3-202ENST00000452372 MTMR11A4FU01 709 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 XYLBO75191 536 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 GNA14O95837 355 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 ASS1P00966 412 aaKnown RBP21.35■■□□□ 1.01
COL9A3-202ENST00000452372 WARSP23381 471 aaKnown RBP21.35■■□□□ 1.01
COL9A3-202ENST00000452372 TSPY1Q01534 308 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 SLC39A12Q504Y0 691 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 TCERG1LQ5VWI1 586 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 OTOP3Q7RTS5 596 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 LRRTM3Q86VH5 581 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 DCP1BQ8IZD4 617 aaKnown RBP21.35■■□□□ 1.01
COL9A3-202ENST00000452372 TAS1R2Q8TE23 839 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 MED15Q96RN5 788 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 SRRTQ9BXP5 876 aaKnown RBP21.35■■□□□ 1.01
COL9A3-202ENST00000452372 MMRN2Q9H8L6 949 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 WDR6Q9NNW5 1121 aaKnown RBP21.35■■□□□ 1.01
COL9A3-202ENST00000452372 HSFX1Q9UBD0 423 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 INSL5Q9Y5Q6 135 aa21.35■■□□□ 1.01
COL9A3-202ENST00000452372 ZFHX2Q9C0A1 2572 aaPredicted RBP21.35■■□□□ 1.01
COL9A3-202ENST00000452372 CCL16O15467 120 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 FGFR1OPO95684 399 aaKnown RBP21.34■■□□□ 1.01
COL9A3-202ENST00000452372 LRG1P02750 347 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 PCSK1P29120 753 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 PIK3CAP42336 1068 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 DUSP4Q13115 394 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 DPCR1Q3MIW9 517 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 CCDC40Q4G0X9 1142 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 DCAF17Q5H9S7 520 aaPredicted RBP21.34■■□□□ 1.01
COL9A3-202ENST00000452372 ATAD1Q8NBU5 361 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 C2orf15Q8WU43 125 aaKnown RBP21.34■■□□□ 1.01
COL9A3-202ENST00000452372 SLC35C1Q96A29 364 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 PRRX2Q99811 253 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 DACH1Q9UI36 760 aa21.34■■□□□ 1.01
COL9A3-202ENST00000452372 POLIQ9UNA4 740 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms