RNA–Protein interactions for RNA: ENST00000452143.5

USP1-204, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 3

Gene USP1, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-204ENST00000452143 STYXL1Q9Y6J8 313 aa11.78□□□□□ -0.52
USP1-204ENST00000452143 FOXD2O60548 495 aaPredicted RBP11.77□□□□□ -0.53
USP1-204ENST00000452143 RETP07949 1114 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 ATF6P18850 670 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 HOXA6P31267 233 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 ACOT2P49753 483 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 CCINQ13939 588 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 GAS6Q14393 721 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 DHX8Q14562 1220 aaKnown RBP11.77□□□□□ -0.53
USP1-204ENST00000452143 MCM6Q14566 821 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 KARSQ15046 597 aaKnown RBP11.77□□□□□ -0.53
USP1-204ENST00000452143 MGAT5BQ3V5L5 792 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 SLC39A12Q504Y0 691 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 GPR158Q5T848 1215 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 ADALQ6DHV7 355 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 LONP2Q86WA8 852 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 METTL23Q86XA0 190 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 THEM5Q8N1Q8 247 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 BPIFB1Q8TDL5 484 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 TMEM209Q96SK2 561 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 ZHX3Q9H4I2 956 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 TASP1Q9H6P5 420 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 SMC3Q9UQE7 1217 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 GREB1Q4ZG55 1949 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 CEP295Q9C0D2 2601 aa11.77□□□□□ -0.53
USP1-204ENST00000452143 CNOT1A5YKK6 2376 aaKnown RBP11.77□□□□□ -0.53
USP1-204ENST00000452143 SOBPA7XYQ1 873 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 K7ESF4 209 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 CYB561D2O14569 222 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 SOAT2O75908 522 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 IL18RAPO95256 599 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 PRAMEF12O95522 483 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 NMT1P30419 496 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 PNPLA4P41247 253 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 SOX9P48436 509 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 ATXN1P54253 815 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 PTPAQ15257 358 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 SV2CQ496J9 727 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 TXNDC11Q6PKC3 985 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 PRR23BQ6ZRT6 265 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 KRI1Q8N9T8 703 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 ZNF560Q96MR9 790 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 LPIN3Q9BQK8 851 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 PYM1Q9BRP8 204 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 UPF2Q9HAU5 1272 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 IL21Q9HBE4 155 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 PARD6AQ9NPB6 346 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 THG1LQ9NWX6 298 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 DPP3Q9NY33 737 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 GTSE1Q9NYZ3 720 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 SEL1LQ9UBV2 794 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 STK17AQ9UEE5 414 aa11.76□□□□□ -0.53
USP1-204ENST00000452143 AGO2Q9UKV8 859 aaKnown RBP11.76□□□□□ -0.53
USP1-204ENST00000452143 MAP1BP46821 2468 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 KPNA7A9QM74 516 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 ANKRD63C9JTQ0 380 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 PPP1R37O75864 691 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 CD2BP2O95400 341 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 DDX6P26196 483 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP1-204ENST00000452143 DDIT3P35638 169 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 CYP4F8P98187 520 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 GRIN1Q05586 938 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 SPEM2Q0P670 501 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 SIM2Q14190 667 aaPredicted RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 POSTNQ15063 836 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 SF3A1Q15459 793 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 TAF12Q16514 161 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 ITPRIPL2Q3MIP1 535 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 ZC2HC1CQ53FD0 456 aaPredicted RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 WDR44Q5JSH3 913 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 LARP1BQ659C4 914 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 Q6ZS52 159 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 DCP1BQ8IZD4 617 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 NETO1Q8TDF5 533 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 POMGNT1Q8WZA1 660 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 ZFYVE19Q96K21 471 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 LRRC3BQ96PB8 259 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 KIF9Q9HAQ2 790 aa11.75□□□□□ -0.53
USP1-204ENST00000452143 RBM12Q9NTZ6 932 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 HELZP42694 1942 aaKnown RBP11.75□□□□□ -0.53
USP1-204ENST00000452143 KIAA1549LQ6ZVL6 1849 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 CHURC1-FNTBB4DL54 471 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 TISP43B9A030 160 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 HAPLN1P10915 354 aaPredicted RBP11.74□□□□□ -0.53
USP1-204ENST00000452143 AVPR1AP37288 418 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 FNTBP49356 437 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 TSPY1Q01534 308 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 PON2Q15165 354 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 CSRP2Q16527 193 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 LPAL2Q16609 132 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 NFE2Q16621 373 aaPredicted RBP11.74□□□□□ -0.53
USP1-204ENST00000452143 WSCD1Q658N2 575 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 ZNF720Q7Z2F6 126 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 SFR1Q86XK3 245 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 EFCAB13Q8IY85 973 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 CMTM8Q8IZV2 173 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 LEO1Q8WVC0 666 aaPredicted RBP11.74□□□□□ -0.53
USP1-204ENST00000452143 SEMA4GQ9NTN9 838 aa11.74□□□□□ -0.53
USP1-204ENST00000452143 ABI2Q9NYB9 513 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms